Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G019733 Populus trichocarpa HOM05D006531 ORTHO05D007905 0.0e+00 1174.5 577 100.0
Potri.007G019800 Populus trichocarpa HOM05D006531 ORTHO05D007905 0.0e+00 1157.5 578 98.8
Sabra07G0016900 Salix brachista HOM05D006531 ORTHO05D007905 7.9e-271 936.8 521 89.1
Gohir.D11G188400 Gossypium hirsutum HOM05D006531 ORTHO05D007905 3.4e-181 639.0 580 57.4
Gorai.007G200500 Gossypium raimondii HOM05D006531 ORTHO05D007905 6.5e-180 634.8 580 57.1
Duzib187G1823 Durio zibethinus HOM05D006531 ORTHO05D007905 1.6e-178 630.2 580 57.1
Atru.chr3.665 Acer truncatum HOM05D006531 ORTHO05D007905 4.3e-176 622.1 590 55.9
Thecc.01G028000 Theobroma cacao HOM05D006531 ORTHO05D007905 1.4e-174 617.1 580 57.4
Haze_03846 Corylus avellana HOM05D006531 ORTHO05D007905 1.3e-172 610.5 582 56.2
COL.COLO4_22012 Corchorus olitorius HOM05D006531 ORTHO05D007905 6.1e-170 601.7 580 57.2
Ciclev10025250m.g Citrus clementina HOM05D006531 ORTHO05D007905 9.7e-168 594.3 589 53.1
Dinv05610 Davidia involucrata HOM05D006531 ORTHO05D007905 1.2e-165 587.4 556 54.5
QL06p035210 Quercus lobata HOM05D006531 ORTHO05D007905 2.0e-165 586.6 602 52.8
Gohir.D11G322533 Gossypium hirsutum HOM05D006531 ORTHO05D007905 2.6e-165 586.3 580 54.3
MD15G1254500 Malus domestica HOM05D006531 ORTHO05D007905 2.6e-165 586.3 575 54.6
Cpa.g.sc89.75 Carica papaya HOM05D006531 ORTHO05D007905 2.2e-164 583.2 592 53.5
GSVIVG01018883001 Vitis vinifera HOM05D006531 ORTHO05D007905 9.4e-163 577.8 577 53.6
TWI53G1729 Tripterygium wilfordii HOM05D006531 ORTHO05D007905 1.8e-161 573.5 591 54.0
TAR628G0973 Trochodendron aralioides HOM05D006531 ORTHO05D007905 1.4e-158 563.9 595 51.1
Actinidia35619 Actinidia chinensis HOM05D006531 ORTHO05D007905 3.4e-157 559.3 578 52.1
RcHm_v2.0_Chr2g0100811 Rosa chinensis HOM05D006531 ORTHO05D007905 1.7e-156 557.0 572 53.1
FAN19G3073 Fragaria x ananassa HOM05D006531 ORTHO05D007905 1.5e-152 543.9 574 51.0
vmacro17801 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 3.3e-152 542.7 597 50.3
FvH4_1g12740 Fragaria vesca HOM05D006531 ORTHO05D007905 2.8e-151 539.7 579 50.4
FAN28G0612 Fragaria x ananassa HOM05D006531 ORTHO05D007905 5.3e-150 535.4 576 51.0
FAN26G0669 Fragaria x ananassa HOM05D006531 ORTHO05D007905 7.0e-150 535.0 588 50.9
CANSAT21G1927 Cannabis sativa HOM05D006531 ORTHO05D007905 1.3e-148 530.8 578 48.3
FAN23G2909 Fragaria x ananassa HOM05D006531 ORTHO05D007905 3.8e-148 529.3 574 50.7
CsaV3_6G046680 Cucumis sativus L. HOM05D006531 ORTHO05D007905 3.2e-147 526.2 583 49.2
Atru.BG.101.p Acer truncatum HOM05D006531 ORTHO05D007905 2.1e-146 523.5 579 50.3
Lalb_Chr16g0391021 Lupinus albus HOM05D006531 ORTHO05D007905 4.7e-146 522.3 575 47.5
Prupe.7G159100 Prunus persica HOM05D006531 ORTHO05D007905 8.0e-146 521.5 525 52.6
MELO3C007866.2 Cucumis melo HOM05D006531 ORTHO05D007905 6.7e-145 518.5 585 49.1
Cc07_g10020 Coffea canephora HOM05D006531 ORTHO05D007905 8.8e-145 518.1 580 50.0
Rhsim08G0121800 Rhododendron simsii HOM05D006531 ORTHO05D007905 3.3e-144 516.2 571 50.3
Oeu056763.1 Olea europaea HOM05D006531 ORTHO05D007905 9.7e-144 514.6 579 49.9
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 6.3e-143 511.9 614 46.7
Manes.02G098000 Manihot esculenta HOM05D006531 ORTHO05D007905 1.8e-142 510.4 415 61.7
Glyma.02G053000 Glycine max HOM05D006531 ORTHO05D007905 2.5e-139 500.0 577 46.3
VMungo0251G0240 Vigna mungo HOM05D006531 ORTHO05D007905 5.5e-139 498.8 578 46.2
MSTRG.23258 Avicennia marina HOM05D006531 ORTHO05D007905 5.2e-137 492.3 579 46.8
PSO675G3692 Papaver somniferum HOM05D006531 ORTHO05D007905 4.4e-136 489.2 605 46.0
PGR102G2490 Punica granatum HOM05D006531 ORTHO05D007905 5.7e-136 488.8 581 46.5
arahy.Tifrunner.gnm1.ann1.P54VLQ Arachis hypogaea HOM05D006531 ORTHO05D007905 1.4e-134 484.2 583 46.5
Migut.H02514 Erythranthe guttata HOM05D006531 ORTHO05D007905 1.4e-134 484.2 575 45.6
arahy.Tifrunner.gnm1.ann1.WDDE23 Arachis hypogaea HOM05D006531 ORTHO05D007905 1.8e-134 483.8 583 46.7
Aqoxy6G01185 Aquilegia oxysepala HOM05D006531 ORTHO05D007905 5.4e-134 482.3 614 44.3
Medtr8g076860 Medicago truncatula HOM05D006531 ORTHO05D007905 1.6e-133 480.7 580 44.8
PSO541G5850 Papaver somniferum HOM05D006531 ORTHO05D007905 7.7e-133 478.4 589 47.5
Eucgr.J02379 Eucalyptus grandis HOM05D006531 ORTHO05D007905 2.5e-131 473.4 578 45.0
EL10As8g23896 Beta vulgaris HOM05D006531 ORTHO05D007905 3.3e-131 473.0 581 43.7
DCAR_001553 Daucus carota HOM05D006531 ORTHO05D007905 3.3e-131 473.0 577 46.1
PGSC0003DMG400022568 Solanum tuberosum HOM05D006531 ORTHO05D007905 2.1e-130 470.3 579 45.6
Ah.03g141200 Amaranthus hybridus HOM05D006531 ORTHO05D007905 1.0e-129 468.0 579 43.9
Hund14004 Selenicereus undatus HOM05D006531 ORTHO05D007905 2.3e-129 466.8 588 45.6
Sopen03g006510 Solanum pennellii HOM05D006531 ORTHO05D007905 4.0e-129 466.1 584 44.7
TPR.G21544 Trifolium pratense HOM05D006531 ORTHO05D007905 8.9e-129 464.9 585 44.4
Psat4g096120 Pisum sativum HOM05D006531 ORTHO05D007905 7.5e-128 461.8 584 43.5
SalBow8G4669 Salvia bowleyana HOM05D006531 ORTHO05D007905 2.2e-127 460.3 572 44.6
Ca_22340_v3 Cicer arietinum L. HOM05D006531 ORTHO05D007905 3.7e-127 459.5 584 43.0
Lsat_1_v5_gn_4_151921 Lactuca sativa HOM05D006531 ORTHO05D007905 6.3e-127 458.8 580 45.0
Lj4g0004916 Lotus japonicus HOM05D006531 ORTHO05D007905 6.3e-127 458.8 581 44.4
AUR62007614 Chenopodium quinoa HOM05D006531 ORTHO05D007905 1.4e-126 457.6 582 43.8
AUR62004101 Chenopodium quinoa HOM05D006531 ORTHO05D007905 4.1e-126 456.1 582 44.3
Solyc03g033720.4 Solanum lycopersicum HOM05D006531 ORTHO05D007905 7.0e-126 455.3 584 44.2
THA.LOC104819768 Tarenaya hassleriana HOM05D006531 ORTHO05D007905 1.6e-125 454.1 589 44.5
AT3G26750 Arabidopsis thaliana HOM05D006531 ORTHO05D007905 2.7e-125 453.4 582 45.7
Sp2g15880 Schrenkiella parvula HOM05D006531 ORTHO05D007905 5.6e-123 445.7 584 44.2
Sc07g0000880 Simmondsia chinensis HOM05D006531 ORTHO05D007905 7.3e-123 445.3 581 43.0
AL5G15610 Arabidopsis lyrata HOM05D006531 ORTHO05D007905 9.5e-123 444.9 581 45.4
Nitab4.5_0011360g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 1.6e-122 444.1 578 44.1
Lj2C458T7 Lonicera japonica HOM05D006531 ORTHO05D007905 2.1e-122 443.7 451 50.8
ECA232G0312 Erigeron canadensis HOM05D006531 ORTHO05D007905 8.0e-122 441.8 580 45.2
CARHR147820 Cardamine hirsuta HOM05D006531 ORTHO05D007905 5.2e-121 439.1 584 43.8
CAN.G753.1 Capsicum annuum HOM05D006531 ORTHO05D007905 6.8e-121 438.7 578 43.3
Thhalv10003992m.g Eutrema salsugineum HOM05D006531 ORTHO05D007905 6.4e-119 432.2 585 42.4
Nitab4.5_0001289g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 4.1e-118 429.5 608 42.4
CDE04G2389 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 7.0e-118 428.7 588 41.7
CiPaw.07G051400 Carya illinoinensis HOM05D006531 ORTHO05D007905 2.0e-117 427.2 421 53.2
A06p41760 Brassica napus HOM05D006531 ORTHO05D007905 8.6e-116 421.8 581 42.9
BraA06t27096Z Brassica rapa HOM05D006531 ORTHO05D007905 8.6e-116 421.8 581 42.9
Gohir.A11G181766 Gossypium hirsutum HOM05D006531 ORTHO05D007905 1.9e-115 420.6 415 52.3
BcaC06g33892 Brassica carinata HOM05D006531 ORTHO05D007905 9.5e-115 418.3 580 43.3
BolC7t44097H Brassica oleracea HOM05D006531 ORTHO05D007905 1.8e-113 414.1 584 42.6
BcaC06g31044 Brassica carinata HOM05D006531 ORTHO05D007905 4.0e-113 412.9 584 42.6
C07p35780 Brassica napus HOM05D006531 ORTHO05D007905 3.4e-112 409.8 584 42.1
Aa31LG2G5790 Aethionema arabicum HOM05D006531 ORTHO05D007905 1.3e-111 407.9 576 42.4
HanXRQChr09g0261281 Helianthus annuus HOM05D006531 ORTHO05D007905 7.0e-110 402.1 576 41.1
ATR0585G072 Amborella trichopoda HOM05D006531 ORTHO05D007905 4.7e-106 389.4 595 38.2
Sed0004808 Sechium edule HOM05D006531 ORTHO05D007905 2.9e-103 380.2 421 48.9
Peaxi162Scf00010g00816 Petunia axillaris HOM05D006531 ORTHO05D007905 8.6e-100 368.6 567 39.2
Os02g0130900 Oryza sativa ssp. japonica HOM05D006531 ORTHO05D007905 6.2e-98 362.5 598 37.8
MBI16_g36847_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 8.4e-95 352.1 454 44.5
unitig_0.g471 Utricularia gibba HOM05D006531 ORTHO05D007905 3.2e-94 350.1 571 38.9
HPP92_011628 Vanilla planifolia HOM05D006531 ORTHO05D007905 1.2e-88 331.6 552 37.0
Hma1.2p1_3019F.1_g331750 Hydrangea macrophylla HOM05D006531 ORTHO05D007905 2.0e-88 330.9 367 50.7
Carub.0005s0479 Capsella rubella HOM05D006531 ORTHO05D007905 2.9e-87 327.0 453 44.8
SGA_v2.0_scaffold12G06335 Striga asiatica HOM05D006531 ORTHO05D007905 8.4e-87 325.5 414 43.0
Phvul.003G257232 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 2.2e-71 274.2 244 52.9
MBI14_g29302_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 1.9e-59 234.6 188 59.6
Phvul.003G257166 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 5.3e-57 226.5 257 47.5
Mapoly0011s0081 Marchantia polymorpha HOM05D006531 ORTHO05D007905 1.2e-56 225.3 639 29.0
Zm00001eb209020 Zea mays HOM05D006531 ORTHO05D007905 5.0e-55 219.9 523 31.0
Pp3c2_6980 Physcomitrium patens HOM05D006531 ORTHO05D007905 1.1e-51 208.8 608 27.1
Nn5g29702 Nelumbo nucifera HOM05D006531 ORTHO05D007905 8.2e-50 202.6 583 28.0
TAR376G0004 Trochodendron aralioides HOM05D006531 ORTHO05D007905 2.6e-43 181.0 143 62.2
vmacro23089 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 6.3e-42 176.4 130 63.8
CSS0007477 Camellia sinensis var. sinensis HOM05D006531 ORTHO05D007905 1.2e-40 172.2 133 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1148 Anthoceros agrestis HOM05D006531 ORTHO05D007905 2.7e-37 161.0 479 24.6
Zm00001eb231290 Zea mays HOM05D006531 ORTHO05D007905 9.1e-33 146.0 227 38.3
Carub.0006s2991 Capsella rubella HOM05D006531 ORTHO05D007905 1.2e-27 129.0 422 29.6
Lj2g0008134 Lotus japonicus HOM05D006531 ORTHO05D007905 5.0e-23 113.6 154 45.5
TAR376G0395 Trochodendron aralioides HOM05D006531 ORTHO05D007905 5.5e-22 110.2 140 46.4
SEGI_05601 Sequoiadendron giganteum HOM05D006531 ORTHO05D007905 9.8e-19 99.4 324 26.2
Sc07g0000850 Simmondsia chinensis HOM05D006531 ORTHO05D007905 2.6e-11 74.7 75 46.7
TAR629G1149 Trochodendron aralioides HOM05D006531 ORTHO05D007905 3.7e-10 70.9 74 47.3
RcHm_v2.0_Chr4g0390451 Rosa chinensis HOM05D006531 ORTHO05D007905 4.1e-09 67.4 43 74.4
CBR_g8866 Chara braunii HOM05D006531 ORTHO05D007905 9.2e-09 66.2 81 33.3
MSTRG.2488 Avicennia marina HOM05D006531 ORTHO05D007905 1.5e-06 58.9 77 40.3
CDE06G1394 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 3.3e-06 57.8 76 46.1


User provided reference genes

Program Settings