Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.0e-66 255.0 124 100.0
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.5e-65 252.7 123 98.4
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 1.2e-62 243.0 123 91.9
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 4.5e-54 214.5 122 77.9
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 7.6e-54 213.8 123 77.2
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 1.3e-53 213.0 123 76.4
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 6.5e-53 210.7 123 75.6
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.5e-52 208.8 122 74.6
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 6.1e-51 204.1 123 75.6
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 8.7e-50 200.3 119 73.9
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 4.3e-49 198.0 121 73.6
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 7.4e-49 197.2 123 74.0
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.2e-48 195.7 122 69.7
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.2e-48 195.7 123 70.7
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.2e-48 195.7 123 70.7
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 2.8e-48 195.3 123 70.7
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 2.8e-48 195.3 123 72.4
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 8.2e-48 193.7 123 70.7
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.1e-47 191.4 123 69.9
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 9.0e-47 190.3 123 68.3
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.2e-46 189.9 123 69.9
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 4.5e-46 188.0 123 69.9
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.3e-45 186.4 123 69.1
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.7e-45 186.0 123 68.3
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.7e-45 186.0 123 68.3
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 1.7e-45 186.0 123 66.7
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 2.9e-45 185.3 123 69.9
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 5.0e-45 184.5 123 68.3
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 8.5e-45 183.7 123 65.9
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.4e-44 183.0 123 68.3
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 2.1e-43 179.1 122 63.1
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 3.6e-43 178.3 123 64.2
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 6.1e-43 177.6 123 63.4
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 1.5e-41 172.9 123 61.8
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 4.8e-40 167.9 123 61.8
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 3.2e-36 155.2 195 43.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 3.0e-34 148.7 123 56.1
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 5.1e-34 147.9 123 54.5
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 5.7e-33 144.4 123 51.2
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.3e-32 143.3 123 52.8
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.8e-32 142.1 112 58.0
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 3.1e-31 138.7 112 56.2
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 5.3e-31 137.9 112 56.2
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 5.3e-31 137.9 112 55.4
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 5.3e-31 137.9 112 56.2
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 5.3e-31 137.9 112 56.2
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.2e-30 136.7 155 48.4
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 4.5e-30 134.8 123 51.2
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.1e-27 125.9 121 47.9
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 6.1e-27 124.4 124 49.2
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.4e-26 123.2 121 47.1
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 2.3e-26 122.5 124 46.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 2.3e-26 122.5 124 46.8
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 2.3e-26 122.5 112 51.8
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 5.2e-26 121.3 105 51.4
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 5.2e-26 121.3 120 45.8
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 2.0e-25 119.4 91 61.5
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 4.4e-25 118.2 123 48.0
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.4e-25 118.2 124 45.2
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 7.5e-25 117.5 124 46.0
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.7e-24 116.3 122 45.9
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 3.7e-24 115.2 121 47.1
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 4.8e-24 114.8 123 45.5
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 4.8e-24 114.8 126 43.7
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.4e-23 113.2 120 45.0
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 3.1e-23 112.1 122 45.9
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 3.1e-23 112.1 126 42.9
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 3.1e-23 112.1 121 46.3
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 5.3e-23 111.3 120 46.7
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 7.0e-23 110.9 118 43.2
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.2e-22 110.2 122 44.3
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.6e-22 109.8 121 44.6
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.0e-22 109.4 122 45.1
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 3.5e-22 108.6 122 43.4
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 3.5e-22 108.6 59 78.0
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 3.5e-22 108.6 117 46.2
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 4.5e-22 108.2 123 44.7
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 7.7e-22 107.5 122 43.4
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.0e-21 107.1 123 42.3
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 1.0e-21 107.1 117 45.3
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 1.3e-21 106.7 121 44.6
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 2.2e-21 105.9 56 80.4
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 2.2e-21 105.9 123 41.5
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.9e-21 105.5 123 43.1
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 6.5e-21 104.4 127 41.7
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 2.5e-20 102.4 74 66.2
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 2.5e-20 102.4 123 39.8
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.2e-20 101.7 97 52.6
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 5.5e-20 101.3 123 40.7
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 5.5e-20 101.3 122 42.6
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.2e-19 100.1 122 41.0
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.1e-19 99.4 123 42.3
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.1e-19 99.4 122 40.2
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 2.7e-19 99.0 118 39.8
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 3.6e-19 98.6 123 42.3
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 4.7e-19 98.2 118 41.5
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 3.0e-18 95.5 88 50.0
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.2e-17 93.6 125 38.4
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.5e-17 93.2 118 38.1
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.5e-17 93.2 118 38.1
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 1.5e-17 93.2 59 66.1
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.4e-17 92.0 122 41.8
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.3e-16 90.1 119 34.5
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 4.8e-16 88.2 123 35.8
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 6.3e-16 87.8 88 47.7
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 6.3e-16 87.8 122 35.2
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.1e-15 87.0 118 36.4
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 7.0e-15 84.3 118 38.1
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 7.0e-15 84.3 93 41.9
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 2.7e-14 82.4 82 42.7
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.7e-14 82.4 123 35.8
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 4.5e-14 81.6 103 35.9
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 4.5e-14 81.6 103 35.9
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.7e-13 79.7 108 37.0
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 2.2e-13 79.3 82 43.9
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 2.9e-13 79.0 102 38.2
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 3.2e-12 75.5 126 35.7
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 9.4e-12 73.9 89 37.1
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 1.6e-11 73.2 68 52.9
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 1.0e-10 70.5 34 82.4
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 1.4e-10 70.1 34 82.4
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 5.2e-10 68.2 86 33.7
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 5.7e-09 64.7 84 33.3
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 5.7e-09 64.7 68 44.1
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 9.8e-09 63.9 65 44.6
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 4.9e-08 61.6 56 55.4
ATR0618G111 Amborella trichopoda HOM05D005772 ORTHO05D006468 8.3e-08 60.8 50 60.0
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 4.1e-07 58.5 68 45.6
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 1.6e-06 56.6 55 45.5
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 1.6e-06 56.6 65 41.5
QL10p063736 Quercus lobata HOM05D001309 ORTHO05D022844 4.5e-06 55.1 33 69.7
QL10p063927 Quercus lobata HOM05D000344 ORTHO05D022844 4.5e-06 55.1 33 69.7
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 4.5e-06 55.1 68 45.6
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 5.9e-06 54.7 82 34.1
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 7.7e-06 54.3 65 40.0
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 7.7e-06 54.3 65 38.5


User provided reference genes

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