Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 1.3e-58 229.6 122 100.0
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 1.8e-47 192.6 118 89.0
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 1.1e-31 140.2 128 64.1
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 4.4e-30 134.8 125 55.2
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 2.9e-29 132.1 102 71.6
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 2.4e-28 129.0 116 52.6
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 7.1e-28 127.5 115 64.3
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 7.1e-28 127.5 116 54.3
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 2.1e-27 125.9 95 73.7
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 2.1e-27 125.9 121 62.0
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 2.7e-27 125.6 119 63.9
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 6.0e-27 124.4 120 60.0
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 1.3e-26 123.2 89 67.4
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.3e-26 123.2 120 50.0
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 2.3e-26 122.5 121 51.2
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 3.9e-26 121.7 119 49.6
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 5.1e-26 121.3 122 50.8
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 1.1e-25 120.2 120 50.0
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 1.1e-25 120.2 116 47.4
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 2.5e-25 119.0 123 49.6
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 2.5e-25 119.0 122 60.7
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 5.6e-25 117.9 130 47.7
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 1.3e-24 116.7 120 53.3
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 2.1e-24 115.9 127 47.2
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 2.1e-24 115.9 123 50.4
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 4.8e-24 114.8 125 47.2
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 4.8e-24 114.8 121 47.9
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 6.2e-24 114.4 106 64.2
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 6.2e-24 114.4 118 56.8
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 6.2e-24 114.4 119 49.6
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 6.2e-24 114.4 89 71.9
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 1.1e-23 113.6 88 71.6
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 1.4e-23 113.2 119 58.0
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 1.4e-23 113.2 123 48.0
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 1.8e-23 112.8 119 47.1
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 1.8e-23 112.8 126 54.8
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 2.4e-23 112.5 119 59.7
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 3.1e-23 112.1 100 52.0
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 6.9e-23 110.9 73 72.6
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 1.2e-22 110.2 113 49.6
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 2.6e-22 109.0 126 54.0
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 2.6e-22 109.0 73 64.4
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 4.4e-22 108.2 103 48.5
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 7.6e-22 107.5 116 44.8
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 1.7e-21 106.3 74 58.1
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 2.2e-21 105.9 104 62.5
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 2.2e-21 105.9 89 68.5
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 2.2e-21 105.9 139 42.4
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 2.9e-21 105.5 87 55.2
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 3.8e-21 105.1 89 67.4
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 4.9e-21 104.8 89 66.3
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 6.4e-21 104.4 89 67.4
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 1.4e-20 103.2 117 45.3
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 2.4e-20 102.4 73 60.3
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 3.2e-20 102.1 88 67.0
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 5.4e-20 101.3 104 59.6
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 5.4e-20 101.3 103 46.6
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 9.3e-20 100.5 84 56.0
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 9.3e-20 100.5 65 67.7
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 3.5e-19 98.6 107 43.9
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 4.6e-19 98.2 64 62.5
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 1.0e-18 97.1 93 50.5
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 1.0e-18 97.1 63 61.9
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 2.3e-18 95.9 70 70.0
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 5.1e-18 94.7 102 51.0
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 1.1e-17 93.6 110 40.9
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 1.5e-17 93.2 90 63.3
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 5.6e-17 91.3 87 49.4
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 7.3e-17 90.9 77 58.4
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 7.3e-17 90.9 98 60.2
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 4.8e-16 88.2 64 62.5
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 3.1e-15 85.5 90 47.8
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 5.3e-15 84.7 79 46.8
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 6.9e-15 84.3 90 46.7
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 1.2e-14 83.6 90 46.7
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 1.7e-13 79.7 120 40.8
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 2.9e-13 79.0 91 47.3
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 2.4e-12 75.9 61 54.1
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 7.9e-11 70.9 63 47.6
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 1.0e-10 70.5 38 68.4
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 1.0e-10 70.5 96 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 4.3e-09 65.1 87 37.9
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 5.6e-09 64.7 53 50.9
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 1.3e-08 63.5 45 62.2
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 3.7e-08 62.0 33 78.8
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 5.8e-06 54.7 34 64.7
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 7.6e-06 54.3 56 48.2


User provided reference genes

Program Settings