Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-66 255.8 129 100.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-66 255.8 129 100.0
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 4.7e-54 214.5 117 91.5
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 5.7e-52 207.6 117 91.5
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.0e-46 187.2 133 76.7
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 5.9e-41 171.0 124 77.4
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 6.5e-40 167.5 129 69.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 5.9e-33 144.4 120 65.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.1e-30 134.4 124 57.3
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.8e-29 132.9 124 60.5
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.4e-28 128.6 127 55.1
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.2e-27 125.9 126 54.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.1e-26 123.6 127 53.5
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 5.4e-26 121.3 127 55.1
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 7.0e-26 120.9 127 51.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.7e-25 119.0 129 50.4
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.5e-25 118.2 133 51.9
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.9e-24 115.5 126 49.2
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 6.6e-24 114.4 127 52.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.1e-23 113.6 124 55.6
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.6e-23 111.3 123 51.2
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 5.6e-23 111.3 124 53.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 7.3e-23 110.9 127 52.0
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 9.5e-23 110.5 124 52.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.5e-23 110.5 136 48.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.2e-22 110.2 121 51.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.6e-22 109.8 133 48.9
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.1e-22 109.4 124 52.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.8e-22 109.0 124 53.2
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.6e-22 108.6 126 50.0
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 3.6e-22 108.6 124 53.2
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 4.7e-22 108.2 142 46.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.7e-22 108.2 126 53.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.7e-22 108.2 121 52.1
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 4.7e-22 108.2 134 48.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 6.1e-22 107.8 125 48.0
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.0e-21 107.1 138 47.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.0e-21 107.1 123 52.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.8e-21 106.3 121 52.1
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.3e-21 105.9 128 53.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.3e-21 105.9 127 48.8
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.0e-21 105.5 123 51.2
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.0e-21 105.5 125 53.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 4.0e-21 105.1 131 48.9
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.2e-21 104.8 127 48.8
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 8.9e-21 104.0 123 50.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.0e-20 102.8 128 53.1
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.0e-20 102.8 130 47.7
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.0e-20 102.8 125 45.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 3.4e-20 102.1 124 46.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.4e-20 101.7 126 49.2
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 4.4e-20 101.7 128 43.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.7e-20 101.3 128 52.3
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.5e-20 100.9 130 49.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 7.5e-20 100.9 130 48.5
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 9.8e-20 100.5 120 49.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 9.8e-20 100.5 123 49.6
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.3e-19 100.1 117 53.8
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.3e-19 100.1 121 48.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 130 47.7
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 124 46.0
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.7e-19 99.8 120 49.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-19 99.4 117 53.8
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.9e-19 99.0 130 49.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 48.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 48.8
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.9e-19 98.2 121 47.9
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.9e-19 98.2 121 47.9
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.9e-19 98.2 134 49.3
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-18 97.1 120 48.3
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-18 97.1 123 49.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-18 97.1 125 43.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.4e-18 96.7 122 48.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.4e-18 95.9 125 49.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.2e-18 95.5 120 49.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 5.4e-18 94.7 115 47.8
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.0e-18 94.4 127 47.2
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 7.0e-18 94.4 78 62.8
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-17 93.6 112 52.7
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.2e-17 93.6 123 47.2
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.6e-17 93.2 125 49.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-17 93.2 125 49.6
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.5e-17 92.0 130 41.5
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.9e-17 91.3 127 46.5
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 5.9e-17 91.3 129 48.8
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.9e-17 91.3 123 48.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 123 45.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 123 45.5
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 48.0
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 44.0
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.7e-16 89.7 128 46.9
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.7e-16 89.7 119 46.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.3e-16 89.4 126 43.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.0e-16 89.0 123 45.5
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 3.9e-16 88.6 137 49.6
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 121 44.6
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.5e-15 86.7 133 43.6
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.3e-15 85.5 126 44.4
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.3e-15 85.1 118 46.6
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 5.6e-15 84.7 124 45.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.6e-15 84.7 112 50.9
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 9.5e-15 84.0 132 40.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 9.5e-15 84.0 113 44.2
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.2e-14 83.6 117 44.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-14 83.2 124 46.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-14 83.2 124 46.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.6e-14 83.2 113 45.1
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.6e-14 83.2 124 44.4
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.1e-14 82.8 129 38.8
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-14 82.0 124 46.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.6e-14 82.0 121 46.3
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 3.6e-14 82.0 122 45.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 4.7e-14 81.6 118 45.8
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 4.7e-14 81.6 118 45.8
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.7e-14 81.6 118 45.8
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 4.7e-14 81.6 127 40.2
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 6.2e-14 81.3 119 44.5
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.2e-14 81.3 124 46.0
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 6.2e-14 81.3 118 43.2
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 8.0e-14 80.9 142 38.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.1e-13 80.5 140 40.7
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.1e-13 80.5 118 44.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 118 44.9
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-13 80.5 123 42.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.1e-13 80.5 129 43.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.4e-13 80.1 124 44.4
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.3e-13 79.3 118 46.6
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.1e-13 79.0 118 45.8
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.1e-13 79.0 124 46.8
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 5.2e-13 78.2 119 47.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 6.8e-13 77.8 120 44.2
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 8.9e-13 77.4 122 45.1
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.5e-12 76.6 117 46.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 100 49.0
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.0e-12 76.3 155 35.5
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.0e-12 76.3 111 46.8
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 3.4e-12 75.5 139 36.0
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 5.8e-12 74.7 124 40.3
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 7.5e-12 74.3 96 45.8
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 7.5e-12 74.3 119 41.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 7.5e-12 74.3 128 40.6
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.8e-12 73.9 105 46.7
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.2e-11 72.8 100 48.0
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.2e-11 72.8 79 54.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 3.7e-11 72.0 118 44.1
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 4.9e-11 71.6 119 40.3
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 6.4e-11 71.2 143 38.5
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.4e-11 71.2 131 37.4
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 8.3e-11 70.9 136 39.0
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-10 70.1 141 33.3
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.9e-10 69.7 129 41.1
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.4e-10 69.3 111 40.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.0e-10 67.8 126 34.9
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 6.0e-09 64.7 121 40.5
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 7.8e-09 64.3 93 44.1
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 7.8e-09 64.3 93 44.1
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.0e-08 63.9 119 38.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.6e-08 61.2 93 44.1
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 1.1e-07 60.5 85 44.7
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.5e-07 59.3 168 30.4
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.6e-06 56.6 155 33.5
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 6.2e-06 54.7 157 29.9


User provided reference genes

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