Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G273100 Populus trichocarpa HOM05D004099 ORTHO05D004777 4.7e-98 361.7 259 100.0
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 7.8e-85 317.8 259 73.4
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 4.8e-74 282.0 252 71.4
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 3.4e-72 275.8 257 66.5
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 1.1e-33 147.9 257 49.8
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 1.2e-27 127.9 169 58.0
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.0e-27 127.1 256 42.6
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 5.7e-27 125.6 255 47.8
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 7.5e-27 125.2 260 45.8
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 1.7e-26 124.0 153 58.8
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 4.8e-26 122.5 255 42.7
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.1e-25 121.3 253 36.0
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 1.8e-25 120.6 167 55.1
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 3.1e-25 119.8 268 48.5
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 5.3e-25 119.0 260 41.9
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 9.1e-25 118.2 157 57.3
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 1.6e-24 117.5 260 44.6
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 3.5e-24 116.3 255 44.3
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 3.5e-24 116.3 260 39.6
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 4.5e-24 115.9 150 49.3
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 6.5e-23 112.1 260 42.7
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.5e-22 110.9 162 46.9
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 1.9e-22 110.5 154 44.8
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 1.9e-22 110.5 154 44.8
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 1.9e-22 110.5 153 52.9
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 1.9e-22 110.5 275 41.8
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.9e-22 110.5 151 47.0
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 1.9e-22 110.5 192 40.1
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 2.5e-22 110.2 152 49.3
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 3.2e-22 109.8 173 53.2
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 3.2e-22 109.8 173 53.2
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 3.2e-22 109.8 152 57.9
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 3.2e-22 109.8 162 46.3
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 4.2e-22 109.4 156 51.3
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 7.2e-22 108.6 154 43.5
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 7.2e-22 108.6 265 41.9
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 7.2e-22 108.6 156 55.8
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 7.2e-22 108.6 162 45.7
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 9.4e-22 108.2 149 47.7
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.4e-22 108.2 195 39.0
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 9.4e-22 108.2 272 39.0
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 1.2e-21 107.8 158 47.5
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 1.2e-21 107.8 195 38.5
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 1.2e-21 107.8 151 48.3
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 1.6e-21 107.5 154 50.0
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 1.6e-21 107.5 149 43.0
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 2.1e-21 107.1 195 38.5
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 2.1e-21 107.1 179 50.3
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 2.7e-21 106.7 152 47.4
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 2.7e-21 106.7 152 47.4
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 2.7e-21 106.7 287 38.3
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 2.7e-21 106.7 176 45.5
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 3.6e-21 106.3 152 50.0
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 3.6e-21 106.3 152 47.4
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 3.6e-21 106.3 152 48.0
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 6.1e-21 105.5 152 47.4
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 6.1e-21 105.5 191 41.9
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 8.0e-21 105.1 85 60.0
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 8.0e-21 105.1 188 41.5
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 1.0e-20 104.8 188 51.1
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 4.0e-20 102.8 152 49.3
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 4.0e-20 102.8 155 51.0
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 5.2e-20 102.4 85 61.2
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 6.8e-20 102.1 149 46.3
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 1.2e-19 101.3 81 66.7
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 1.2e-19 101.3 85 57.6
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 1.5e-19 100.9 194 39.2
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 1.5e-19 100.9 193 39.4
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-19 100.9 149 42.3
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 1.5e-19 100.9 151 51.0
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 2.0e-19 100.5 157 50.3
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 2.0e-19 100.5 85 63.5
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 2.6e-19 100.1 149 41.6
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 2.6e-19 100.1 265 37.0
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 2.6e-19 100.1 149 41.6
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 2.6e-19 100.1 149 46.3
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 2.6e-19 100.1 149 46.3
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 3.4e-19 99.8 171 50.3
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.7e-19 99.0 146 52.1
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 7.5e-19 98.6 84 61.9
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 7.5e-19 98.6 265 37.7
TWI63G1022 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 7.5e-19 98.6 266 38.7
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 9.8e-19 98.2 148 48.0
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 9.8e-19 98.2 148 48.0
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 1.3e-18 97.8 265 36.6
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 2.8e-18 96.7 153 50.3
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 8.3e-18 95.1 196 39.3
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 1.1e-17 94.7 89 59.6
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 1.1e-17 94.7 89 59.6
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 1.4e-17 94.4 153 47.7
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 1.8e-17 94.0 181 43.6
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 1.8e-17 94.0 159 49.1
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 2.4e-17 93.6 160 36.2
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 3.1e-17 93.2 261 34.5
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 3.1e-17 93.2 261 34.5
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 3.1e-17 93.2 261 34.5
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 5.4e-17 92.4 156 39.1
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 5.4e-17 92.4 273 34.1
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 9.1e-17 91.7 90 54.4
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 1.6e-16 90.9 265 36.2
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 1.6e-16 90.9 153 52.3
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 1.0e-15 88.2 156 37.8
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 2.3e-15 87.0 153 38.6
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 2.9e-15 86.7 151 37.7
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 2.9e-15 86.7 85 52.9
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 3.8e-15 86.3 151 37.7
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 3.8e-15 86.3 151 37.7
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 3.8e-15 86.3 151 37.7
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 3.8e-15 86.3 151 37.7
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.0e-15 85.9 194 46.9
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.1e-14 84.7 86 54.7
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.5e-14 84.3 86 54.7
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 1.5e-14 84.3 89 53.9
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 3.3e-14 83.2 86 53.5
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 3.3e-14 83.2 152 45.4
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 4.2e-14 82.8 86 53.5
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 7.2e-14 82.0 88 54.5
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 1.2e-13 81.3 92 51.1
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.2e-13 81.3 153 43.8
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 1.6e-13 80.9 235 41.7
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 3.6e-13 79.7 152 36.8
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 3.6e-13 79.7 152 43.4
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 3.6e-13 79.7 152 43.4
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 8.0e-13 78.6 153 41.8
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 8.0e-13 78.6 152 47.4
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 1.4e-12 77.8 157 36.3
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.8e-12 77.4 265 36.6
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 2.3e-12 77.0 153 43.8
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 3.0e-12 76.6 203 42.9
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 4.0e-12 76.3 166 45.8
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 8.9e-12 75.1 87 50.6
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 8.9e-12 75.1 274 35.8
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 8.9e-12 75.1 87 47.1
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 1.5e-11 74.3 83 53.0
Ciclev10009036m.g Citrus clementina HOM05D004099 ORTHO05D004777 1.5e-11 74.3 88 52.3
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 2.0e-11 73.9 85 54.1
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 3.4e-11 73.2 87 50.6
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 3.4e-11 73.2 87 50.6
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 5.7e-11 72.4 203 42.4
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 5.7e-11 72.4 203 41.9
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 5.7e-11 72.4 203 41.9
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 9.8e-11 71.6 88 51.1
MBI16_g09343_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 1.4e-09 67.8 84 50.0
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.4e-09 67.8 91 48.4
Os08g0516900 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 3.2e-09 66.6 64 56.2
HPP92_015829 Vanilla planifolia HOM05D002359 ORTHO05D002394 4.1e-09 66.2 74 52.7
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 9.2e-09 65.1 105 43.8
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 9.2e-09 65.1 149 40.9
Zm00001eb174750 Zea mays HOM05D002359 ORTHO05D002394 4.5e-08 62.8 90 43.3
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 5.9e-08 62.4 84 45.2
ATR0580G260 Amborella trichopoda HOM05D002359 ORTHO05D002394 1.0e-07 61.6 61 50.8
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.0e-07 61.6 66 54.5
Ah.12g061250 Amaranthus hybridus HOM05D004099 ORTHO05D004777 1.7e-07 60.8 102 43.1
Aqoxy7G02919 Aquilegia oxysepala HOM05D002359 ORTHO05D002394 1.7e-07 60.8 62 50.0
Zm00001eb317350 Zea mays HOM05D002359 ORTHO05D002394 1.7e-07 60.8 70 50.0
Zm00001eb035860 Zea mays HOM05D002359 ORTHO05D002394 2.9e-07 60.1 65 49.2
Os09g0499000 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 3.9e-07 59.7 68 50.0
Oeu018566.1 Olea europaea HOM05D004099 ORTHO05D004777 1.9e-06 57.4 69 44.9
Os06g0698748 Oryza sativa ssp. japonica HOM05D004099 ORTHO05D004777 2.5e-06 57.0 67 50.7
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 5.6e-06 55.8 70 50.0
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 9.5e-06 55.1 70 50.0


User provided reference genes

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