Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-155 553.1 305 100.0
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-83 314.3 348 62.9
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 5.1e-83 312.0 348 62.6
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-77 293.9 346 61.6
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-76 290.4 348 59.8
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.1e-72 276.2 348 58.6
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 6.0e-68 261.9 322 55.9
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.8e-65 252.3 351 55.0
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.1e-64 249.6 350 54.9
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 6.0e-60 235.3 323 54.2
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 8.7e-59 231.5 333 48.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 7.4e-58 228.4 302 54.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 9.0e-56 221.5 349 48.7
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.5e-55 219.2 319 53.0
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.8e-55 218.8 316 54.7
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.7e-54 217.2 286 56.3
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.1e-53 214.5 278 56.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 3.2e-53 213.0 261 58.6
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.2e-52 211.1 289 55.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.0e-52 208.8 323 54.5
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.0e-52 208.8 289 54.3
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.3e-51 207.6 303 50.8
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 2.3e-51 206.8 323 53.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.3e-51 206.8 326 50.3
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 5.1e-51 205.7 220 58.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 6.7e-51 205.3 312 49.4
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 3.3e-50 203.0 350 45.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.4e-50 201.8 332 48.5
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-49 201.1 354 45.8
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.3e-49 201.1 333 47.1
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.8e-49 199.9 331 50.5
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 3.7e-49 199.5 344 49.4
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.1e-48 198.0 319 47.6
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.4e-48 197.6 334 50.6
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.4e-48 196.8 309 47.2
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 5.3e-48 195.7 299 51.5
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.3e-48 195.7 342 48.0
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 6.9e-48 195.3 333 44.7
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.5e-47 194.1 281 54.4
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.5e-47 194.1 303 47.9
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.0e-47 193.7 304 53.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.9e-47 192.2 335 49.3
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.7e-46 190.7 324 48.1
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.7e-46 190.7 294 47.3
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.2e-46 190.3 342 48.0
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.8e-46 189.5 317 47.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.8e-46 189.5 328 48.5
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 6.5e-46 188.7 302 47.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 6.5e-46 188.7 311 49.2
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 6.5e-46 188.7 328 48.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.1e-45 188.0 301 48.5
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.5e-45 186.8 307 49.8
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 2.5e-45 186.8 344 47.1
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 2.5e-45 186.8 311 45.7
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.5e-45 186.8 300 49.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.2e-45 186.4 299 48.2
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 4.2e-45 186.0 312 46.8
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.2e-45 186.0 317 44.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 4.2e-45 186.0 303 51.2
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 5.5e-45 185.7 341 43.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 5.5e-45 185.7 312 46.8
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.6e-44 184.1 301 47.5
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.6e-44 184.1 282 50.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-44 184.1 352 44.9
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 3.6e-44 183.0 294 48.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 7.9e-44 181.8 345 45.8
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.0e-43 181.4 307 48.5
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.3e-43 181.0 300 48.0
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 2.3e-43 180.3 319 46.7
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.0e-43 179.9 313 48.6
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 3.9e-43 179.5 386 44.8
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 5.1e-43 179.1 291 45.0
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 8.7e-43 178.3 313 47.3
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.1e-42 177.9 321 51.4
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.1e-42 177.9 322 50.0
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.5e-42 177.6 355 45.4
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.9e-42 177.2 330 45.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 7.4e-42 175.3 297 47.5
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.4e-42 175.3 307 46.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 9.7e-42 174.9 343 44.6
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 9.7e-42 174.9 277 47.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 9.7e-42 174.9 308 44.8
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.3e-41 174.5 348 47.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.7e-41 174.1 322 46.6
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.2e-41 173.7 296 43.9
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.8e-41 173.3 333 47.4
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-40 171.4 313 49.2
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-40 171.4 313 49.2
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.1e-40 171.4 313 49.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.8e-40 170.6 321 45.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-40 170.2 295 46.1
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 4.1e-40 169.5 294 48.6
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 5.3e-40 169.1 295 46.4
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 5.3e-40 169.1 325 45.8
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 6.9e-40 168.7 328 50.9
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.6e-39 166.8 309 46.9
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.6e-39 166.8 296 48.3
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 4.5e-39 166.0 309 46.0
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 3.8e-38 162.9 227 55.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.0e-38 162.5 344 42.4
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 8.5e-38 161.8 314 44.9
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.9e-37 160.6 342 45.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 7.2e-37 158.7 285 43.9
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.6e-36 156.4 290 45.2
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 3.6e-36 156.4 261 45.2
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 8.8e-35 151.8 287 40.8
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 8.8e-35 151.8 317 46.4
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.1e-34 151.4 328 43.0
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.6e-34 150.2 250 46.4
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.2e-33 145.2 214 54.2
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 8.2e-33 145.2 289 44.3
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-32 144.8 289 44.3
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-31 141.4 385 41.8
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.5e-31 141.0 263 43.0
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.0e-31 140.6 317 43.8
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.6e-31 140.2 292 45.2
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 4.5e-31 139.4 306 42.5
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.7e-30 137.5 202 48.0
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.2e-30 137.1 396 40.9
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 2.2e-30 137.1 313 43.5
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 5.0e-30 136.0 306 46.1
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 5.0e-30 136.0 309 36.9
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.1e-29 134.8 325 43.4
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.6e-28 131.0 291 47.4
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.2e-27 125.9 315 41.6
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 6.7e-27 125.6 311 41.5
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-26 124.8 187 46.0
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.5e-26 124.4 318 37.1
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 2.0e-26 124.0 320 35.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-25 121.3 195 48.2
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.8e-25 119.4 290 39.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.4e-24 117.9 267 43.1
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-24 117.9 261 41.4
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 4.1e-24 116.3 275 38.9
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.2e-23 114.8 147 50.3
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.0e-23 114.0 320 31.9
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.0e-22 111.7 250 38.8
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 1.3e-22 111.3 338 40.2
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.0e-22 109.4 282 44.0
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 8.5e-22 108.6 335 37.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.5e-21 107.8 220 46.8
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 1.9e-21 107.5 148 51.4
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 2.5e-21 107.1 129 56.6
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 7.2e-21 105.5 247 37.2
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 6.1e-20 102.4 269 37.2
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 1.0e-19 101.7 160 45.0
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.8e-16 90.9 189 40.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.1e-13 81.6 148 41.2
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 4.0e-11 73.2 128 43.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.2e-11 72.8 112 45.5
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 2.8e-09 67.0 220 33.6
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.1e-08 63.2 89 47.2


User provided reference genes

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