Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G266800 Populus trichocarpa HOM05D007253 ORTHO05D009055 1.1e-67 260.0 150 100.0
Ciclev10009764m.g Citrus clementina HOM05D007253 ORTHO05D009055 3.4e-40 168.7 154 71.4
Potri.018G016400 Populus trichocarpa HOM05D007253 ORTHO05D009055 5.8e-40 167.9 154 72.1
TWI63G1073 Tripterygium wilfordii HOM05D007253 ORTHO05D009055 1.1e-38 163.7 157 70.1
Eucgr.C04033 Eucalyptus grandis HOM05D007253 ORTHO05D009055 4.2e-38 161.8 152 69.7
CSS0046604 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 5.4e-38 161.4 156 69.2
CSS0050010 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 5.4e-38 161.4 156 69.2
Atru.chr7.2576 Acer truncatum HOM05D007253 ORTHO05D009055 6.0e-37 157.9 157 63.7
Dinv03404 Davidia involucrata HOM05D007253 ORTHO05D009055 6.0e-37 157.9 155 67.7
CSS0024958 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 7.9e-37 157.5 157 63.7
Manes.03G007000 Manihot esculenta HOM05D007253 ORTHO05D009055 1.0e-36 157.1 149 70.5
CSS0026470 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 5.1e-36 154.8 109 81.7
COL.COLO4_18974 Corchorus olitorius HOM05D007253 ORTHO05D009055 8.7e-36 154.1 159 65.4
TAR626G1108 Trochodendron aralioides HOM05D007253 ORTHO05D009055 8.7e-36 154.1 153 66.0
MD15G1043300 Malus domestica HOM05D007253 ORTHO05D009055 1.1e-35 153.7 150 67.3
Duzib187G0122 Durio zibethinus HOM05D007253 ORTHO05D009055 2.5e-35 152.5 158 63.3
Prupe.1G396700 Prunus persica HOM05D007253 ORTHO05D009055 4.3e-35 151.8 150 66.0
Cpa.g.sc148.44 Carica papaya HOM05D007253 ORTHO05D009055 7.4e-35 151.0 151 67.5
Thecc.09G013200 Theobroma cacao HOM05D007253 ORTHO05D009055 7.4e-35 151.0 158 65.8
CiPaw.07G233200 Carya illinoinensis HOM05D007253 ORTHO05D009055 1.6e-34 149.8 152 65.1
Gorai.009G064300 Gossypium raimondii HOM05D007253 ORTHO05D009055 2.1e-34 149.4 154 65.6
Nn8g40104 Nelumbo nucifera HOM05D007253 ORTHO05D009055 2.1e-34 149.4 155 63.2
Gohir.D05G063600 Gossypium hirsutum HOM05D007253 ORTHO05D009055 2.8e-34 149.1 154 64.3
Duzib168G0559 Durio zibethinus HOM05D007253 ORTHO05D009055 3.7e-34 148.7 126 74.6
MELO3C016946.2 Cucumis melo HOM05D007253 ORTHO05D009055 4.8e-34 148.3 127 74.0
Sc09g0010780 Simmondsia chinensis HOM05D007253 ORTHO05D009055 4.8e-34 148.3 152 63.8
GSVIVG01035999001 Vitis vinifera HOM05D007253 ORTHO05D009055 4.8e-34 148.3 108 87.0
PGR044G0212 Punica granatum HOM05D007253 ORTHO05D009055 6.2e-34 147.9 154 66.2
CANSAT35G1478 Cannabis sativa HOM05D007253 ORTHO05D009055 1.4e-33 146.7 125 73.6
Actinidia14140 Actinidia chinensis HOM05D007253 ORTHO05D009055 3.1e-33 145.6 148 64.9
Cc08_g07700 Coffea canephora HOM05D007253 ORTHO05D009055 6.9e-33 144.4 104 82.7
ClCG05G016120 Citrullus lanatus HOM05D007253 ORTHO05D009055 2.0e-32 142.9 158 63.3
RcHm_v2.0_Chr6g0299201 Rosa chinensis HOM05D007253 ORTHO05D009055 3.4e-32 142.1 152 63.8
BcaB06g28020 Brassica carinata HOM05D007253 ORTHO05D009055 4.5e-32 141.7 143 65.0
Aqoxy7G03301 Aquilegia oxysepala HOM05D007253 ORTHO05D009055 7.6e-32 141.0 155 50.3
FvH4_2g41340 Fragaria vesca HOM05D007253 ORTHO05D009055 7.6e-32 141.0 130 70.0
FAN27G1409 Fragaria x ananassa HOM05D007253 ORTHO05D009055 7.6e-32 141.0 128 71.1
Nitab4.5_0005450g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 7.6e-32 141.0 146 61.0
Sp4g03910 Schrenkiella parvula HOM05D007253 ORTHO05D009055 7.6e-32 141.0 143 64.3
Sed0002011 Sechium edule HOM05D007253 ORTHO05D009055 7.6e-32 141.0 110 76.4
MD08G1052200 Malus domestica HOM05D007253 ORTHO05D009055 9.9e-32 140.6 119 58.8
BolC4t27019H Brassica oleracea HOM05D007253 ORTHO05D009055 1.3e-31 140.2 143 65.0
Nitab4.5_0000264g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 1.3e-31 140.2 146 62.3
Lsat_1_v5_gn_6_77860 Lactuca sativa HOM05D007253 ORTHO05D009055 1.7e-31 139.8 146 65.8
BcaC02g08395 Brassica carinata HOM05D007253 ORTHO05D009055 2.2e-31 139.4 143 64.3
A04p19250 Brassica napus HOM05D007253 ORTHO05D009055 2.2e-31 139.4 143 65.0
C04p54740 Brassica napus HOM05D007253 ORTHO05D009055 2.2e-31 139.4 143 64.3
BraA04t17525Z Brassica rapa HOM05D007253 ORTHO05D009055 2.2e-31 139.4 143 65.0
vmacro05116 Vaccinium macrocarpon HOM05D007253 ORTHO05D009055 3.8e-31 138.7 184 57.6
HPP92_010354 Vanilla planifolia HOM05D007253 ORTHO05D009055 3.8e-31 138.7 107 81.3
ATR0580G321 Amborella trichopoda HOM05D007253 ORTHO05D009055 6.4e-31 137.9 151 64.2
FAN15G3156 Fragaria x ananassa HOM05D007253 ORTHO05D009055 6.4e-31 137.9 131 67.9
Oeu023241.1 Olea europaea HOM05D007253 ORTHO05D009055 6.4e-31 137.9 154 63.6
Thhalv10000367m.g Eutrema salsugineum HOM05D007253 ORTHO05D009055 8.4e-31 137.5 143 66.4
PSO063G6023 Papaver somniferum HOM05D007253 ORTHO05D009055 1.9e-30 136.3 150 63.3
Aa31LG7G11560 Aethionema arabicum HOM05D007253 ORTHO05D009055 4.2e-30 135.2 135 65.2
CARHR116800 Cardamine hirsuta HOM05D007253 ORTHO05D009055 4.2e-30 135.2 105 80.0
MBI14_g31385_MAGBIO Magnolia biondii HOM05D007253 ORTHO05D009055 4.2e-30 135.2 148 62.2
CAN.G285.13 Capsicum annuum HOM05D007253 ORTHO05D009055 7.1e-30 134.4 148 59.5
HanXRQChr13g0413301 Helianthus annuus HOM05D007253 ORTHO05D009055 7.1e-30 134.4 103 79.6
SalBow8G5515 Salvia bowleyana HOM05D007253 ORTHO05D009055 7.1e-30 134.4 149 61.7
Medtr3g105830 Medicago truncatula HOM05D007253 ORTHO05D009055 2.1e-29 132.9 103 80.6
THA.LOC104803610 Tarenaya hassleriana HOM05D007253 ORTHO05D009055 2.1e-29 132.9 139 63.3
CDE05G3047 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 2.7e-29 132.5 98 85.7
PSO782G0429 Papaver somniferum HOM05D007253 ORTHO05D009055 2.7e-29 132.5 150 62.0
DCAR_000661 Daucus carota HOM05D007253 ORTHO05D009055 4.6e-29 131.7 108 77.8
ECA240G1715 Erigeron canadensis HOM05D001941 ORTHO05D002198 7.9e-29 131.0 152 61.2
AL4G15950 Arabidopsis lyrata HOM05D007253 ORTHO05D009055 1.0e-28 130.6 99 80.8
Psat5g033080 Pisum sativum HOM05D007253 ORTHO05D009055 1.3e-28 130.2 108 75.9
Carub.0004s0449 Capsella rubella HOM05D007253 ORTHO05D009055 1.8e-28 129.8 100 79.0
SGA_v2.0_scaffold4G02163 Striga asiatica HOM05D007253 ORTHO05D009055 1.8e-28 129.8 103 76.7
AT2G24860 Arabidopsis thaliana HOM05D007253 ORTHO05D009055 2.3e-28 129.4 98 81.6
Solyc08g006620.3 Solanum lycopersicum HOM05D007253 ORTHO05D009055 5.1e-28 128.3 147 59.9
Migut.E01444 Erythranthe guttata HOM05D007253 ORTHO05D009055 1.5e-27 126.7 118 71.2
Phvul.009G086100 Phaseolus vulgaris HOM05D007253 ORTHO05D009055 1.5e-27 126.7 98 80.6
Glyma.04G059900 Glycine max HOM05D007253 ORTHO05D009055 2.5e-27 125.9 106 72.6
Glyma.06G060300 Glycine max HOM05D007253 ORTHO05D009055 2.5e-27 125.9 106 74.5
Hund25608 Selenicereus undatus HOM05D007253 ORTHO05D009055 2.5e-27 125.9 103 72.8
Glyma.17G221800 Glycine max HOM05D007253 ORTHO05D009055 3.3e-27 125.6 123 67.5
MSTRG.13960 Avicennia marina HOM05D007253 ORTHO05D009055 4.3e-27 125.2 98 79.6
Sopen08g002570 Solanum pennellii HOM05D007253 ORTHO05D009055 4.3e-27 125.2 107 72.9
TPR.G1881 Trifolium pratense HOM05D007253 ORTHO05D009055 5.6e-27 124.8 98 79.6
arahy.Tifrunner.gnm1.ann1.LF5WZD Arachis hypogaea HOM05D007253 ORTHO05D009055 7.4e-27 124.4 126 65.1
Os09g0423700 Oryza sativa ssp. japonica HOM05D007253 ORTHO05D009055 7.4e-27 124.4 101 75.2
Lj1g0002882 Lotus japonicus HOM05D007253 ORTHO05D009055 1.6e-26 123.2 149 56.4
CDE02G4354 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 2.1e-26 122.9 94 84.0
Ah.12g060580 Amaranthus hybridus HOM05D007253 ORTHO05D009055 3.7e-26 122.1 148 57.4
EL10Ac2g02465 Beta vulgaris HOM05D007253 ORTHO05D009055 3.7e-26 122.1 154 56.5
Ah.00g238170 Amaranthus hybridus HOM05D007253 ORTHO05D009055 4.8e-26 121.7 103 71.8
Glyma.14G104200 Glycine max HOM05D007253 ORTHO05D009055 4.8e-26 121.7 122 66.4
arahy.Tifrunner.gnm1.ann1.G7TND8 Arachis hypogaea HOM05D007253 ORTHO05D009055 3.1e-25 119.0 103 72.8
Zm00001eb313320 Zea mays HOM05D007253 ORTHO05D009055 3.1e-25 119.0 82 67.1
arahy.Tifrunner.gnm1.ann1.2K72KI Arachis hypogaea HOM05D007253 ORTHO05D009055 6.9e-25 117.9 103 71.8
Lalb_Chr23g0268151 Lupinus albus HOM05D007253 ORTHO05D009055 9.0e-25 117.5 130 61.5
SEGI_37228 Sequoiadendron giganteum HOM05D007253 ORTHO05D009055 5.8e-24 114.8 88 79.5
unitig_32.g11120 Utricularia gibba HOM05D007253 ORTHO05D009055 5.8e-24 114.8 98 74.5
AagrBONN_evm.TU.Sc2ySwM_117.2542 Anthoceros agrestis HOM05D007253 ORTHO05D009055 1.7e-23 113.2 104 69.2
Pp3c6_11160 Physcomitrium patens HOM05D007253 ORTHO05D009055 1.9e-22 109.8 89 75.3
Mapoly0121s0030 Marchantia polymorpha HOM05D007253 ORTHO05D009055 4.6e-21 105.1 93 66.7
Peaxi162Scf00045g01937 Petunia axillaris HOM05D007253 ORTHO05D009055 7.9e-21 104.4 148 52.0
TAR383G0216 Trochodendron aralioides HOM05D007253 ORTHO05D009055 2.3e-20 102.8 80 78.8
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 3.3e-19 99.0 104 62.5
SMO196G0205 Selaginella moellendorffii HOM05D007253 ORTHO05D009055 2.8e-18 95.9 81 70.4
AUR62032436 Chenopodium quinoa HOM05D007253 ORTHO05D009055 6.3e-18 94.7 75 77.3
Sabra18G0019900 Salix brachista HOM05D018710 ORTHO05D023780 8.2e-18 94.4 94 59.6
Gohir.A05G061100 Gossypium hirsutum HOM05D007253 ORTHO05D009055 2.8e-10 69.3 92 45.7
QL02p017999 Quercus lobata HOM05D007253 ORTHO05D009055 6.9e-09 64.7 78 56.4
Haze_21370 Corylus avellana HOM05D007253 ORTHO05D009055 1.9e-06 56.6 78 48.7
Cfa013009 Carpinus fangiana HOM05D018710 ORTHO05D009055 3.2e-06 55.8 79 48.1


User provided reference genes

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