Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 2340.8 1184 100.0
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 2181.8 1184 92.3
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1911.0 1198 80.1
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1901.3 1200 80.8
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1886.7 1204 79.7
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1873.2 1204 78.8
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1204 78.7
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1865.1 1204 79.2
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1864.0 1203 78.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1849.3 1206 78.2
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1848.6 1202 78.2
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1847.8 1294 73.5
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1843.9 1200 78.2
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1836.6 1198 77.0
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1835.5 1205 76.6
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1832.0 1204 77.6
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1830.1 1197 76.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1822.8 1200 76.8
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1821.2 1200 77.1
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1815.8 1203 76.8
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1813.5 1194 76.0
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1813.1 1203 76.8
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1203 75.6
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1216 75.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1807.7 1203 76.6
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1802.3 1203 76.0
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1801.9 1200 76.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1801.6 1216 75.7
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1195 76.5
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1798.1 1209 75.8
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1204 76.2
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1796.6 1204 76.4
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1796.2 1198 76.1
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1795.0 1203 76.1
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1795.0 1200 76.1
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1216 75.2
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1792.3 1294 72.2
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1792.3 1294 72.2
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1790.0 1191 76.1
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1786.9 1191 75.9
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1786.9 1197 76.1
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1784.2 1206 75.6
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1783.5 1197 75.6
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1191 75.7
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1781.5 1197 75.7
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1780.8 1196 76.2
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1779.6 1191 75.7
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1779.6 1189 75.9
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1777.3 1198 75.5
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1775.4 1197 75.5
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1774.2 1194 75.0
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1771.5 1204 73.3
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1197 75.5
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1769.2 1282 71.8
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1767.7 1205 74.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1197 74.8
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1763.8 1214 74.5
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1761.5 1128 79.4
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1754.6 1196 75.1
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1753.0 1197 74.0
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1750.3 1201 73.2
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1209 73.2
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1197 74.3
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1747.6 1202 74.0
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1746.9 1197 74.4
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1743.4 1205 74.0
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1197 74.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1742.2 1202 74.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1741.5 1188 73.7
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1736.1 1094 80.3
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1189 73.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1723.4 1189 73.5
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1723.0 1189 73.2
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1718.4 1345 68.7
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1189 72.9
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1710.7 1203 72.7
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1229 72.3
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1706.8 1188 72.9
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1704.5 1202 72.1
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1680.2 1212 70.4
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1676.4 1194 72.4
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1649.0 1181 71.1
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1646.7 1190 72.1
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1611.3 1207 69.8
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1611.3 1010 80.9
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1606.7 1210 67.6
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1556.2 1032 76.4
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1546.6 1045 75.4
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1543.1 1045 75.4
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1541.6 1187 67.5
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1536.9 1189 65.7
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1510.7 1198 63.9
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1477.2 981 77.8
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1476.8 979 77.3
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1474.9 1023 74.2
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1468.4 1208 61.8
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1442.6 989 74.4
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1396.3 898 79.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1365.1 1057 67.0
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1327.8 924 73.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1310.4 818 80.2
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1295.4 1220 56.7
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1216.4 863 70.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1196.8 1232 52.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1144.4 905 65.6
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 8.1e-312 1073.9 1220 49.0
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.8e-306 1056.2 1220 48.4
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.9e-275 952.6 1189 44.7
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 9.6e-263 911.0 1373 40.8
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-246 857.4 1222 42.7
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.0e-236 823.5 518 80.3
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.7e-227 793.9 1130 42.8
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 4.7e-193 679.5 424 80.9
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 2.3e-155 554.3 427 67.0
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.5e-146 525.0 478 61.9
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-145 521.2 743 42.5
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.9e-141 508.1 324 76.2
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.0e-139 502.3 306 79.1
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 7.6e-127 459.5 350 68.6
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.9e-119 433.3 323 65.3
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 3.7e-113 414.1 292 71.6
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.4e-112 411.4 328 67.4
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.9e-99 367.5 309 61.8
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.7e-97 362.1 360 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.3e-89 335.9 304 55.6
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 8.2e-89 333.2 392 50.3
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.6e-82 311.6 256 64.1
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.4e-67 262.7 154 80.5
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 3.2e-64 251.5 269 52.8
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.4e-48 199.5 164 61.6
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.4e-48 199.5 117 79.5
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 5.4e-48 197.6 141 70.2
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 2.7e-47 195.3 114 75.4
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 9.5e-45 186.8 138 64.5
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 3.1e-43 181.8 145 67.6
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 2.0e-42 179.1 727 25.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.2e-40 171.4 194 51.5
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-38 166.4 274 40.1
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 8.7e-38 163.7 160 58.1
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.4e-32 145.6 164 48.8
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.7e-30 139.4 86 81.4
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.7e-22 110.9 71 69.0
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 4.0e-19 101.7 58 81.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 8.4e-17 94.0 62 74.2
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.8e-14 86.3 227 31.7
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.5e-13 83.2 71 62.0
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 6.2e-12 77.8 47 72.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.2e-10 73.6 55 63.6
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.0e-09 70.5 76 55.3
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.7e-09 69.7 38 78.9
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.2e-09 69.3 74 60.8
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.2e-09 69.3 74 60.8
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.9e-09 68.9 52 55.8
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 4.6e-07 61.6 45 71.1
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.6e-07 61.6 143 35.7


User provided reference genes

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