Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.1e-111 405.2 212 100.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.2e-103 377.9 211 92.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.6e-98 360.9 226 84.5
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.8e-85 318.5 209 78.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.4e-84 316.6 212 77.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 7.1e-84 314.3 207 79.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 2.1e-83 312.8 207 77.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 3.5e-83 312.0 211 76.3
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 4.6e-83 311.6 210 78.1
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.0e-83 311.2 211 76.3
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.0e-83 311.2 209 75.6
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.0e-82 310.5 209 77.5
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.3e-82 310.1 214 78.5
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 5.1e-82 308.1 204 77.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.6e-82 307.8 209 79.9
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 6.6e-82 307.8 210 78.1
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.1e-81 307.0 212 75.5
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.3e-81 305.1 206 78.2
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.3e-80 303.5 207 78.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.3e-80 303.5 205 79.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.6e-80 303.1 212 74.1
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.1e-80 302.8 210 72.9
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.8e-80 302.4 206 77.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.8e-79 299.7 206 76.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.8e-79 299.7 206 76.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 6.9e-79 297.7 202 77.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.0e-79 297.4 202 76.2
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-78 296.6 194 79.4
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.5e-78 296.6 206 75.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.0e-78 296.2 208 73.1
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.4e-78 295.4 215 74.0
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 5.8e-78 294.7 179 81.6
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.8e-78 294.7 194 78.9
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 5.8e-78 294.7 194 78.9
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 5.8e-78 294.7 212 73.1
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 5.8e-78 294.7 202 78.2
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.9e-77 292.4 212 73.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.8e-77 292.0 203 77.3
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.9e-77 291.6 206 77.2
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 4.9e-77 291.6 208 74.0
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.9e-77 291.6 212 73.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.9e-77 291.6 211 72.0
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.4e-77 291.2 212 75.9
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 6.4e-77 291.2 194 77.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 8.4e-77 290.8 213 75.6
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 8.4e-77 290.8 208 73.6
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.4e-77 290.8 212 72.6
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 8.4e-77 290.8 206 74.8
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.1e-76 290.4 208 74.0
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-76 290.4 207 73.4
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-76 290.4 205 76.1
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.9e-76 289.7 199 73.4
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.9e-76 289.7 213 72.8
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.4e-76 289.3 212 73.1
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 3.2e-76 288.9 177 81.9
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.2e-76 288.5 211 68.2
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 9.3e-76 287.3 202 76.2
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-75 287.0 216 73.6
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-75 285.0 211 73.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-75 285.0 211 73.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.6e-75 285.0 194 76.3
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 6.0e-75 284.6 198 74.2
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.0e-74 283.9 198 74.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.0e-74 283.9 213 75.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-74 283.5 187 78.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.3e-74 282.7 200 74.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.9e-74 282.0 194 75.8
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.1e-74 281.6 201 71.1
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.7e-74 281.2 201 72.6
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 8.7e-74 280.8 212 70.3
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 8.7e-74 280.8 185 71.4
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.5e-73 280.0 216 70.8
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 4.3e-73 278.5 212 68.4
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.4e-73 277.7 207 70.5
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.7e-72 275.4 212 68.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.1e-72 274.2 209 67.9
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-71 273.1 209 71.8
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-71 273.1 212 69.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.4e-71 272.7 212 67.9
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.0e-71 271.9 212 68.9
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 6.9e-71 271.2 212 68.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.9e-71 271.2 211 69.2
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.4e-70 268.9 295 54.2
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-69 267.3 161 82.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.0e-69 267.3 200 69.0
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-69 266.9 212 66.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.7e-69 266.5 218 67.4
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.9e-69 265.8 205 68.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.8e-69 265.4 212 67.9
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.8e-69 265.4 218 67.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.9e-69 265.0 209 65.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.4e-69 264.2 201 72.1
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.4e-68 263.5 207 64.7
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.9e-68 263.1 198 69.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.2e-68 262.3 161 80.7
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.2e-68 261.9 207 67.1
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 7.1e-68 261.2 208 66.8
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 7.1e-68 261.2 174 74.1
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 7.1e-68 261.2 207 64.7
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.5e-67 258.8 195 68.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 4.6e-67 258.5 205 68.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.0e-67 258.1 209 66.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-66 257.3 207 64.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.3e-66 256.9 199 69.3
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.3e-66 256.9 212 66.0
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.0e-66 255.8 204 67.6
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 3.9e-66 255.4 200 67.0
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 4.3e-65 251.9 187 70.6
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.7e-65 251.5 175 70.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 5.7e-65 251.5 207 68.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 9.6e-65 250.8 204 66.2
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.1e-64 249.6 198 66.2
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.8e-63 246.5 204 66.2
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.1e-63 245.7 197 66.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.0e-62 243.0 202 64.4
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.6e-62 242.7 169 74.0
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.5e-61 238.0 159 76.7
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.2e-60 235.7 170 73.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 9.3e-60 234.2 204 59.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.7e-59 232.6 208 62.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-57 227.3 197 64.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 7.4e-57 224.6 171 67.8
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 3.4e-54 215.7 128 83.6
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-52 209.9 205 62.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.1e-51 206.5 189 56.1
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.6e-51 205.3 127 80.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.4e-50 203.8 191 60.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 3.1e-47 192.6 208 51.0
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 6.9e-47 191.4 170 56.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.9e-47 191.4 169 63.9
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.9e-45 186.0 205 54.6
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.5e-44 181.8 150 58.0
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 5.5e-44 181.8 201 54.2
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 6.7e-42 174.9 120 71.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.6e-41 172.9 185 56.8
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 9.7e-41 171.0 159 54.1
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.8e-40 168.7 107 78.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.4e-39 166.4 103 78.6
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.0e-37 158.7 96 82.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 4.2e-36 155.6 172 48.8
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.1e-35 153.3 149 50.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-33 147.5 173 50.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.5e-28 130.6 129 56.6
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.7e-19 99.8 212 37.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.0e-18 97.8 73 63.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.0e-18 97.8 98 57.1
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 4.0e-18 95.9 73 61.6
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 7.5e-17 91.7 169 37.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 7.5e-17 91.7 55 74.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.7e-16 90.5 82 56.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 8.6e-13 78.2 62 69.4
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.9e-12 77.0 185 31.4
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 2.1e-11 73.6 95 45.3
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.4e-10 70.9 56 64.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 6.4e-08 62.0 40 75.0


User provided reference genes

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