Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 9.7e-212 740.0 391 100.0
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 1.4e-170 603.2 397 81.6
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 4.8e-110 402.1 395 58.7
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 1.9e-103 380.2 391 55.5
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 2.8e-102 376.3 388 54.6
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 6.3e-102 375.2 388 54.4
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.3e-99 367.5 397 54.7
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 9.3e-98 361.3 387 53.0
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 6.7e-96 355.1 401 52.4
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.4e-93 347.4 387 51.7
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 3.1e-93 346.3 400 50.0
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 5.3e-93 345.5 396 51.3
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.7e-91 340.5 399 51.9
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 6.5e-91 338.6 386 51.6
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 2.5e-90 336.7 397 51.6
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.8e-88 330.5 398 51.3
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 3.9e-88 329.3 386 50.8
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 1.5e-87 327.4 401 48.9
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 1.3e-86 324.3 395 50.9
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 4.8e-86 322.4 400 49.0
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 4.1e-85 319.3 395 49.1
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 5.3e-85 318.9 391 48.6
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 6.9e-85 318.5 407 48.9
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 6.9e-85 318.5 393 48.9
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 3.4e-84 316.2 394 48.0
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 5.9e-84 315.5 394 47.5
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 7.7e-84 315.1 390 49.0
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 1.3e-83 314.3 407 46.9
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 3.8e-83 312.8 393 48.6
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 3.8e-83 312.8 393 48.6
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 8.5e-83 311.6 400 48.0
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 1.4e-82 310.8 393 47.3
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 2.5e-82 310.1 398 48.2
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 2.5e-82 310.1 415 45.1
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 2.5e-82 310.1 393 47.6
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 3.2e-82 309.7 399 47.1
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 3.2e-82 309.7 394 48.0
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 4.2e-82 309.3 393 46.1
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 4.2e-82 309.3 392 48.0
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 4.2e-82 309.3 397 48.9
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 5.5e-82 308.9 416 46.9
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 9.4e-82 308.1 400 46.8
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 6.1e-81 305.4 390 47.2
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.4e-80 304.3 393 46.1
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.4e-80 304.3 396 46.0
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 1.4e-80 304.3 388 48.2
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.8e-80 303.9 407 48.4
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 1.8e-80 303.9 407 47.2
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.3e-80 303.5 406 46.8
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 8.8e-80 301.6 386 47.4
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.1e-79 301.2 392 47.2
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 2.0e-79 300.4 394 47.5
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 2.6e-79 300.1 387 47.5
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 5.7e-79 298.9 403 46.9
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 9.7e-79 298.1 397 48.1
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.2e-78 297.0 392 46.7
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 2.2e-78 297.0 401 45.1
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 2.8e-78 296.6 392 46.4
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.8e-78 296.6 392 46.4
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 2.8e-78 296.6 396 46.7
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 8.2e-78 295.0 389 46.8
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 1.1e-77 294.7 386 45.9
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 1.8e-77 293.9 396 47.5
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 1.8e-77 293.9 411 44.8
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 3.1e-77 293.1 417 47.5
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 4.1e-77 292.7 385 44.9
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 5.3e-77 292.4 411 45.0
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.3e-77 292.4 386 45.3
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 7.0e-77 292.0 385 45.5
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 7.0e-77 292.0 386 45.1
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 9.1e-77 291.6 400 45.5
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 1.6e-76 290.8 396 47.0
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 3.5e-76 289.7 401 45.6
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 7.7e-76 288.5 393 46.3
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 7.7e-76 288.5 395 45.3
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.3e-75 287.7 386 45.1
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 2.9e-75 286.6 406 42.4
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 8.5e-75 285.0 388 46.4
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 8.5e-75 285.0 409 42.5
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 3.2e-74 283.1 394 43.7
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 1.6e-73 280.8 395 44.6
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 3.6e-73 279.6 397 44.6
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 3.6e-73 279.6 390 45.9
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 4.7e-73 279.3 379 46.4
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 4.7e-73 279.3 387 44.2
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 1.4e-72 277.7 417 43.2
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 6.7e-72 275.4 386 44.3
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 8.8e-72 275.0 409 44.3
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 1.1e-71 274.6 404 44.3
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 2.6e-71 273.5 368 45.7
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.6e-71 273.5 395 42.0
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 4.4e-71 272.7 393 43.5
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 9.7e-71 271.6 389 43.7
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 1.7e-70 270.8 382 45.8
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 1.7e-70 270.8 391 46.5
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 2.4e-69 266.9 394 41.6
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 3.1e-69 266.5 379 44.6
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 1.2e-68 264.6 393 43.8
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 4.5e-68 262.7 398 41.7
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 5.9e-68 262.3 391 44.8
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 1.6e-65 254.2 379 44.3
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 8.0e-65 251.9 379 44.1
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.0e-64 251.5 291 48.1
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 1.0e-64 251.5 381 44.1
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 7.5e-63 245.4 285 50.2
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 9.8e-63 245.0 452 37.8
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 8.3e-62 241.9 421 39.0
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 1.8e-61 240.7 283 48.8
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 2.4e-61 240.4 346 44.5
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 3.1e-61 240.0 387 40.6
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 4.1e-61 239.6 362 43.6
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 5.9e-60 235.7 369 43.1
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 1.0e-59 235.0 364 42.9
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 1.9e-58 230.7 268 51.5
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 1.2e-55 221.5 393 36.9
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 9.8e-55 218.4 404 38.4
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 3.5e-52 209.9 357 38.1
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.7e-51 207.6 393 37.4
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 3.8e-51 206.5 362 38.7
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 1.1e-50 204.9 402 37.6
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.6e-49 201.1 280 42.5
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 9.8e-47 191.8 402 36.3
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 9.2e-45 185.3 317 38.8
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 1.2e-39 168.3 318 35.5
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 6.4e-38 162.5 397 35.8
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 7.0e-37 159.1 378 33.6
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 1.3e-35 154.8 459 29.8
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 3.9e-35 153.3 247 40.1
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.5e-31 141.4 167 49.7
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 2.4e-29 134.0 166 47.6
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 2.1e-28 131.0 175 44.6
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 5.8e-23 112.8 173 37.6
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 7.3e-18 95.9 121 44.6
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 2.0e-15 87.8 240 30.8
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 1.7e-14 84.7 170 35.3
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 4.2e-13 80.1 142 40.1
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 1.1e-08 65.5 113 38.9
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 4.9e-06 56.6 83 34.9


User provided reference genes

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