Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 7.5e-222 773.5 374 100.0
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 2.5e-164 582.4 353 82.4
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 1.4e-162 576.6 353 80.7
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 3.0e-138 495.7 343 69.1
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 5.2e-138 495.0 346 68.2
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 9.8e-137 490.7 365 63.3
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 6.3e-136 488.0 348 66.7
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.4e-135 486.1 352 67.0
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 3.5e-134 482.3 351 64.4
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 4.5e-134 481.9 348 65.5
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 7.7e-134 481.1 332 70.5
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 6.6e-133 478.0 349 66.2
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 6.6e-133 478.0 349 66.2
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 3.3e-132 475.7 349 65.3
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 4.2e-132 475.3 351 66.1
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 4.2e-132 475.3 353 63.7
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 7.2e-132 474.6 348 64.4
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 9.5e-132 474.2 352 64.2
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 1.2e-131 473.8 352 64.8
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 1.2e-131 473.8 352 63.1
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 1.2e-131 473.8 352 63.1
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 1.6e-131 473.4 344 66.9
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.6e-131 473.4 352 64.5
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 2.1e-131 473.0 348 65.8
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 2.8e-131 472.6 348 66.1
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 2.8e-131 472.6 353 62.9
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 3.6e-131 472.2 348 65.5
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 3.6e-131 472.2 348 62.9
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 3.6e-131 472.2 349 64.8
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 6.1e-131 471.5 349 64.8
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 1.0e-130 470.7 349 64.5
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 1.0e-130 470.7 348 64.1
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 1.0e-130 470.7 348 63.2
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 1.4e-130 470.3 351 65.0
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 6.8e-130 468.0 348 65.2
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 1.2e-129 467.2 348 64.7
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-129 466.8 350 64.0
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.0e-129 466.5 353 62.9
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 2.6e-129 466.1 348 66.1
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 3.4e-129 465.7 346 64.7
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 5.7e-129 464.9 350 64.3
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 5.7e-129 464.9 348 62.6
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 7.5e-129 464.5 348 63.8
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 1.3e-128 463.8 350 63.7
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 2.2e-128 463.0 351 64.1
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 3.7e-128 462.2 352 61.9
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 4.9e-128 461.8 348 64.1
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 4.9e-128 461.8 348 64.1
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 6.3e-128 461.5 350 63.4
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 6.3e-128 461.5 348 63.8
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 1.1e-127 460.7 348 63.8
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 3.1e-127 459.1 351 62.7
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 5.4e-127 458.4 351 61.8
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 4.5e-126 455.3 348 61.8
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 5.9e-126 454.9 351 63.0
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 1.7e-125 453.4 362 60.2
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 6.6e-125 451.4 364 58.5
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 6.6e-125 451.4 348 61.5
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 6.6e-125 451.4 349 62.8
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 3.3e-124 449.1 346 63.3
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 4.3e-124 448.7 348 60.9
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 2.8e-123 446.0 348 62.1
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 1.0e-122 444.1 331 64.0
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 1.4e-122 443.7 335 63.3
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 4.0e-122 442.2 333 64.9
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 8.9e-122 441.0 352 61.6
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.0e-121 439.9 343 60.6
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 3.4e-121 439.1 346 62.1
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 4.4e-121 438.7 349 59.3
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.7e-120 435.6 347 60.5
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.9e-120 435.3 349 60.5
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 6.4e-120 434.9 349 59.3
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.4e-120 434.9 347 60.5
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 1.4e-119 433.7 349 59.3
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.4e-119 433.7 348 61.5
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.9e-119 433.3 339 61.7
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.1e-119 432.2 349 59.6
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 5.4e-119 431.8 332 61.4
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 7.0e-119 431.4 349 59.3
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 1.2e-118 430.6 349 59.3
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 2.0e-118 429.9 349 59.3
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.5e-118 429.1 351 60.4
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 6.0e-118 428.3 349 58.5
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 6.0e-118 428.3 349 58.5
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 1.7e-117 426.8 290 69.0
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.7e-117 426.8 339 61.4
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 2.3e-117 426.4 349 57.9
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 2.3e-117 426.4 350 58.6
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 3.0e-117 426.0 350 59.1
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 3.9e-117 425.6 346 61.0
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 6.6e-117 424.9 355 58.0
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 1.9e-116 423.3 350 58.0
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.4e-114 417.2 349 58.7
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.0e-114 415.6 339 60.8
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 1.2e-113 414.1 316 62.7
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.4e-113 412.5 321 61.1
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.4e-113 412.5 350 58.6
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.4e-113 412.1 356 56.2
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.8e-113 411.8 353 56.7
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 5.8e-113 411.8 364 58.2
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.4e-111 407.1 351 55.6
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.1e-111 405.6 347 57.6
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.1e-111 405.6 347 57.6
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.2e-110 404.1 335 58.5
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 1.2e-110 404.1 351 58.1
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.6e-110 403.7 351 56.7
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.5e-110 402.5 335 58.2
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.1e-108 397.5 352 52.8
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 1.6e-107 393.7 343 58.0
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.1e-107 393.3 353 55.2
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.2e-107 391.7 361 54.3
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 1.8e-106 390.2 357 53.5
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 3.1e-106 389.4 352 55.1
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 3.4e-105 386.0 344 53.5
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 7.5e-105 384.8 335 56.7
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 2.9e-104 382.9 346 54.0
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 8.3e-104 381.3 346 56.1
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.6e-102 377.1 348 54.0
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.0e-101 374.4 359 51.3
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 2.5e-100 369.8 336 57.7
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 3.6e-99 365.9 304 57.9
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 1.5e-97 360.5 262 67.6
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 2.6e-97 359.8 344 49.4
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 4.9e-96 355.5 344 50.0
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 4.6e-94 349.0 357 49.6
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.0e-94 348.6 339 54.0
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 3.3e-92 342.8 364 49.2
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 3.6e-91 339.3 249 65.9
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 2.0e-89 333.6 335 53.7
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.6e-89 331.6 337 53.1
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.7e-88 330.5 352 51.1
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 2.9e-88 329.7 242 61.2
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.7e-85 320.5 324 51.2
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 1.3e-75 287.7 356 41.0
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 9.9e-73 278.1 230 59.1
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 4.9e-72 275.8 345 41.4
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 6.4e-72 275.4 213 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 1.6e-59 234.2 256 45.7
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 2.7e-54 216.9 186 57.0
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 3.0e-53 213.4 254 46.9
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 2.0e-49 200.7 181 54.7
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 9.7e-44 181.8 123 71.5
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 2.7e-38 163.7 228 38.6
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 2.7e-30 137.1 86 73.3
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 3.6e-30 136.7 104 63.5
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.1e-30 136.0 149 48.3
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 6.1e-30 136.0 127 52.8
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 4.4e-20 103.2 77 63.6
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 7.5e-20 102.4 155 36.1
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.3e-19 101.7 155 36.1
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 1.7e-19 101.3 91 57.1
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 1.0e-13 82.0 66 60.6
Nn2g11897 Nelumbo nucifera HOM05D004606 ORTHO05D005086 5.2e-13 79.7 60 66.7
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 8.9e-13 79.0 66 60.6
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.5e-07 61.6 53 52.8


User provided reference genes

Program Settings