Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 4.7e-43 177.6 96 100.0
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 9.9e-17 90.1 54 83.3
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 1.3e-16 89.7 54 83.3
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 1.7e-16 89.4 54 85.2
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 85.2
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 2.2e-16 89.0 54 83.3
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 2.9e-16 88.6 54 81.5
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 2.9e-16 88.6 54 81.5
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 2.9e-16 88.6 54 83.3
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 3.7e-16 88.2 54 83.3
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 3.7e-16 88.2 54 83.3
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 83.3
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 4.9e-16 87.8 54 81.5
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 6.4e-16 87.4 54 81.5
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 6.4e-16 87.4 54 83.3
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 6.4e-16 87.4 54 81.5
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 6.4e-16 87.4 54 81.5
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 6.4e-16 87.4 54 81.5
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 6.4e-16 87.4 54 81.5
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 8.3e-16 87.0 54 81.5
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 8.3e-16 87.0 54 83.3
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 8.3e-16 87.0 54 81.5
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 1.1e-15 86.7 54 81.5
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 1.1e-15 86.7 55 83.6
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 1.4e-15 86.3 54 81.5
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.4e-15 86.3 54 79.6
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 1.4e-15 86.3 54 81.5
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 1.9e-15 85.9 54 81.5
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 2.4e-15 85.5 54 81.5
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 2.4e-15 85.5 54 81.5
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 2.4e-15 85.5 54 81.5
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 2.4e-15 85.5 54 81.5
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 2.4e-15 85.5 54 77.8
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.4e-15 85.5 54 81.5
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 3.2e-15 85.1 54 81.5
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 3.2e-15 85.1 54 79.6
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 3.2e-15 85.1 54 81.5
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 5.4e-15 84.3 54 79.6
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 5.4e-15 84.3 54 79.6
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 7.1e-15 84.0 54 79.6
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 7.1e-15 84.0 54 77.8
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 7.1e-15 84.0 54 77.8
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 1.2e-14 83.2 54 75.9
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 1.2e-14 83.2 54 77.8
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 1.6e-14 82.8 54 77.8
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 1.6e-14 82.8 54 77.8
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 1.6e-14 82.8 54 77.8
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.6e-14 82.8 54 77.8
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 2.1e-14 82.4 54 79.6
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 4.6e-14 81.3 55 72.7
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 3.9e-13 78.2 54 74.1
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 3.9e-13 78.2 54 74.1
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 5.1e-13 77.8 54 74.1
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 4.3e-12 74.7 54 70.4
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 4.3e-12 74.7 55 67.3
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 7.3e-12 73.9 55 67.3
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 1.2e-11 73.2 56 69.6
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 2.8e-11 72.0 56 69.6
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 4.7e-11 71.2 55 65.5
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 6.2e-11 70.9 56 71.4
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 1.8e-10 69.3 56 62.5
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 2.4e-10 68.9 59 61.0
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 5.2e-10 67.8 59 61.0
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 8.9e-10 67.0 58 63.8
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 2.0e-09 65.9 58 55.2
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 2.6e-09 65.5 54 59.3
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 3.4e-09 65.1 59 59.3
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 4.4e-09 64.7 58 53.4
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 9.9e-09 63.5 39 82.1
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 1.3e-08 63.2 40 80.0
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 1.3e-08 63.2 39 82.1
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.4e-07 59.7 38 76.3
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 2.4e-07 58.9 67 52.2


User provided reference genes

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