Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 9.5e-47 189.9 100 100.0
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.8e-45 185.7 100 99.0
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 5.8e-28 127.5 67 95.5
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 6.6e-24 114.0 97 66.0
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 6.6e-24 114.0 97 66.0
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 3.3e-23 111.7 79 72.2
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 7.3e-23 110.5 95 65.3
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 6.2e-22 107.5 79 73.4
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 8.1e-22 107.1 94 67.0
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 1.1e-21 106.7 95 63.2
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 5.3e-21 104.4 94 66.0
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 5.3e-21 104.4 98 61.2
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 6.9e-21 104.0 98 59.2
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.5e-20 102.8 95 64.2
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 1.5e-20 102.8 100 59.0
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 2.0e-20 102.4 97 63.9
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 2.6e-20 102.1 94 59.6
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 2.6e-20 102.1 90 63.3
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 5.8e-20 100.9 98 61.2
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 9.9e-20 100.1 100 56.0
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.3e-19 99.8 76 72.4
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 1.7e-19 99.4 95 64.2
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 2.9e-19 98.6 86 64.0
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 1.1e-18 96.7 94 59.6
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 2.4e-18 95.5 77 67.5
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 2.4e-18 95.5 76 63.2
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 3.2e-18 95.1 79 63.3
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 4.2e-18 94.7 98 55.1
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 5.4e-18 94.4 95 57.9
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 7.1e-18 94.0 94 54.3
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 7.1e-18 94.0 98 55.1
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 7.1e-18 94.0 80 62.5
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 9.3e-18 93.6 96 58.3
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 9.3e-18 93.6 98 53.1
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.2e-17 93.2 93 57.0
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.6e-17 92.8 77 59.7
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 2.7e-17 92.0 95 53.7
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 2.7e-17 92.0 98 54.1
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 2.7e-17 92.0 95 54.7
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 4.6e-17 91.3 95 56.8
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 6.0e-17 90.9 95 52.6
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 1.8e-16 89.4 77 58.4
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 1.8e-16 89.4 77 58.4
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 3.0e-16 88.6 76 60.5
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 3.0e-16 88.6 76 60.5
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 3.9e-16 88.2 94 52.1
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 3.9e-16 88.2 94 53.2
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 3.9e-16 88.2 80 61.2
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 8.7e-16 87.0 83 57.8
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 8.7e-16 87.0 83 57.8
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 8.7e-16 87.0 96 51.0
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 1.1e-15 86.7 91 57.1
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.1e-15 86.7 98 51.0
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 1.5e-15 86.3 85 55.3
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.5e-15 86.3 79 57.0
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 2.5e-15 85.5 76 64.5
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 3.3e-15 85.1 64 65.6
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 3.3e-15 85.1 81 58.0
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 4.3e-15 84.7 82 57.3
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 4.3e-15 84.7 78 59.0
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 5.6e-15 84.3 72 65.3
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 7.4e-15 84.0 81 55.6
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 7.4e-15 84.0 82 57.3
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.3e-14 83.2 92 51.1
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 1.3e-14 83.2 64 67.2
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 1.3e-14 83.2 64 67.2
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.3e-14 83.2 81 55.6
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 1.3e-14 83.2 98 51.0
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 2.8e-14 82.0 81 53.1
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 3.7e-14 81.6 72 61.1
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 4.8e-14 81.3 82 54.9
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 4.8e-14 81.3 76 55.3
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 1.4e-13 79.7 97 51.5
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.8e-13 79.3 121 43.0
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 1.8e-13 79.3 74 55.4
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 2.4e-13 79.0 65 61.5
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 5.3e-13 77.8 92 52.2
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 5.3e-13 77.8 75 54.7
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 9.0e-13 77.0 82 50.0
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 1.2e-12 76.6 89 49.4
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 2.0e-12 75.9 75 52.0
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.0e-12 75.9 87 51.7
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 2.9e-11 72.0 65 55.4
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 2.9e-11 72.0 56 60.7
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.9e-10 69.3 57 59.6
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.5e-10 68.9 103 42.7
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 5.5e-10 67.8 50 62.0
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 1.2e-09 66.6 77 48.1
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 6.7e-08 60.8 47 61.7
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 1.1e-07 60.1 97 37.1
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 6.2e-06 54.3 46 60.9


User provided reference genes

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