Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 0.0e+00 2628.2 1310 100.0
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 0.0e+00 2294.2 1315 88.1
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 0.0e+00 2034.6 1310 79.2
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 0.0e+00 1984.1 1307 78.1
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 0.0e+00 1236.9 1325 53.7
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.3e-268 930.6 1317 44.0
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.8e-254 883.6 1316 42.6
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 8.4e-252 874.8 1312 42.6
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 7.9e-250 868.2 1323 43.2
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.0e-244 851.3 1378 42.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 3.8e-244 849.4 1313 42.4
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.2e-239 831.6 1322 42.0
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 7.9e-234 815.1 1322 41.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.8e-233 813.9 1320 40.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.5e-232 810.8 1257 41.7
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.4e-227 794.3 1313 40.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.6e-226 790.8 1307 40.6
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.7e-223 780.8 1315 39.9
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.1e-222 776.5 1296 40.7
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.1e-222 776.5 1296 40.4
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.4e-219 767.7 1296 40.4
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 9.4e-219 765.0 1310 40.5
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 7.4e-216 755.4 1345 39.9
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.4e-214 751.1 1312 38.4
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.8e-214 750.7 1303 39.8
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.6e-213 746.9 1311 38.6
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.9e-213 745.7 1311 38.5
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.3e-212 744.6 1312 38.0
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.6e-208 730.3 1247 39.6
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.7e-207 727.6 1319 39.1
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 3.5e-197 693.3 1321 37.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.8e-186 657.1 1339 36.3
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.6e-163 578.9 1326 34.9
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.1e-161 573.9 1452 32.9
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 2.9e-143 514.2 818 41.6
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.1e-141 508.1 1301 33.7
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.0e-140 504.2 1345 32.5
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 6.2e-138 496.5 1050 35.5
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 8.1e-138 496.1 1296 33.8
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.0e-135 489.2 1333 33.0
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.3e-135 488.8 1298 34.0
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 4.9e-135 486.9 1303 33.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 6.0e-133 479.9 1109 35.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 6.0e-133 479.9 1301 32.8
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 2.6e-128 464.5 1315 32.9
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.5e-128 463.8 1268 33.0
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.1e-123 449.1 1298 32.6
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 3.1e-121 441.0 1293 31.4
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 4.1e-121 440.7 1301 32.3
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 6.9e-121 439.9 1295 31.5
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.0e-120 438.3 1270 31.4
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.7e-119 435.3 1296 31.7
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.2e-117 429.1 1301 32.0
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.2e-117 429.1 1305 31.1
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 5.1e-116 423.7 1310 30.9
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-113 416.0 1302 31.3
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 6.9e-113 413.3 1301 30.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.0e-108 399.4 1188 32.3
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 5.1e-108 397.1 1278 31.1
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.0e-107 395.2 1320 29.6
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.3e-107 394.4 1296 30.3
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 6.5e-103 380.2 1312 27.4
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.1e-99 369.4 1338 28.3
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 9.1e-97 359.8 1308 28.4
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.2e-96 359.4 1295 29.3
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 5.9e-96 357.1 1318 27.7
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.2e-95 355.1 1306 30.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 1.9e-94 352.1 1296 29.2
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.2e-90 338.6 1297 28.6
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.8e-90 338.2 1306 28.4
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 9.1e-89 333.2 1392 27.1
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.6e-83 315.1 1271 27.9
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 6.3e-82 310.5 1295 28.3
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.2e-80 306.2 1314 27.2
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.0e-79 303.1 1293 27.8
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.0e-79 303.1 594 36.9
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.3e-79 302.0 1347 28.6
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-78 299.7 559 38.1
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.5e-78 299.3 1303 27.0
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.3e-78 298.1 1294 27.8
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 6.8e-76 290.4 388 44.3
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.6e-72 279.3 737 33.2
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.1e-70 273.1 1257 27.5
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-67 262.7 447 38.9
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-67 262.7 447 38.9
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 2.0e-67 262.3 1341 26.4
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.4e-67 261.2 1301 27.1
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-66 259.2 447 38.9
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 7.0e-65 253.8 1276 25.6
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.7e-64 251.9 1349 27.3
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-63 249.6 1355 26.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 3.0e-63 248.4 1357 25.9
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 9.5e-62 243.4 1291 26.9
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.9e-58 231.9 1301 25.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.9e-58 231.9 1327 26.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.1e-57 229.9 1333 26.0
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 7.1e-57 227.3 1169 27.5
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.6e-56 226.1 1280 25.7
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 6.0e-56 224.2 1280 25.7
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-55 222.6 1351 25.1
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 6.6e-55 220.7 1280 25.8
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 6.6e-55 220.7 1280 25.8
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.6e-55 220.7 308 42.9
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 3.3e-54 218.4 1340 25.6
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 8.1e-53 213.8 1280 25.6
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 6.8e-52 210.7 270 47.4
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-51 208.4 289 42.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 3.7e-50 204.9 1329 26.6
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 7.1e-49 200.7 1293 25.1
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 9.2e-49 200.3 1293 25.4
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 9.2e-49 200.3 1293 25.1
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.7e-48 198.7 1326 26.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 3.0e-47 195.3 1286 24.8
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 5.1e-47 194.5 1296 24.4
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 9.6e-46 190.3 1296 24.3
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 4.0e-44 184.9 1353 26.8
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.5e-43 183.0 1316 25.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.6e-43 180.6 1300 23.2
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.4e-42 177.6 1294 24.4
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.1e-40 172.6 1328 23.6
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.5e-40 171.8 1295 23.9
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.4e-36 159.1 1316 24.7
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.0e-35 156.0 1269 22.5
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 2.6e-35 155.6 770 28.1
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 2.1e-32 146.0 1271 23.5
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 3.0e-31 142.1 698 26.8
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 5.1e-31 141.4 587 26.1
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.1e-29 136.0 273 34.8
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 2.1e-29 136.0 1369 22.9
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.1e-29 136.0 376 33.0
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 4.8e-29 134.8 947 23.3
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.7e-26 126.3 1321 23.2
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 4.9e-26 124.8 1286 22.8
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 6.4e-26 124.4 1275 22.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.4e-25 123.2 113 49.6
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.9e-25 122.9 1128 22.5
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.8e-23 116.3 793 22.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.9e-23 115.2 1318 23.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.1e-23 114.8 804 23.5
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.5e-22 113.2 799 23.9
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.9e-22 112.8 691 27.4
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.3e-22 112.1 1000 23.1
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-21 110.2 353 30.9
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 4.8e-21 108.2 405 27.4
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.4e-20 106.7 1106 22.7
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.0e-20 104.0 542 27.3
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.5e-19 103.2 1354 22.7
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 1.0e-18 100.5 109 52.3
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 5.5e-17 94.7 474 28.3
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.6e-16 93.2 422 24.4
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 4.6e-16 91.7 374 27.3
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 7.9e-16 90.9 214 30.4
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 3.9e-15 88.6 106 39.6
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.9e-15 88.6 88 45.5
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 5.1e-15 88.2 110 46.4
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 6.7e-15 87.8 260 33.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 3.3e-14 85.5 271 29.2
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.6e-13 83.2 107 41.1
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.6e-13 83.2 107 36.4
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 2.1e-13 82.8 113 38.1
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 4.8e-13 81.6 531 24.5
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 6.3e-13 81.3 850 22.2
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 9.0e-12 77.4 99 38.4
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 9.0e-12 77.4 88 40.9
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.5e-11 76.6 207 30.9
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-11 76.6 521 22.6
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.0e-11 76.3 104 38.5
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 2.6e-11 75.9 662 23.9
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 4.5e-11 75.1 86 40.7
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.5e-11 75.1 99 41.4
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 4.5e-11 75.1 275 30.2
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.5e-11 75.1 109 41.3
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 7.6e-11 74.3 217 29.0
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 7.6e-11 74.3 67 49.3
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 2.9e-10 72.4 539 24.3
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.7e-08 65.9 62 41.9
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 4.6e-08 65.1 66 43.9
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.3e-07 63.5 215 26.5
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 3.0e-07 62.4 97 36.1
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 6.7e-07 61.2 275 24.4
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 1.9e-06 59.7 54 48.1
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 1.9e-06 59.7 54 48.1
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 4.3e-06 58.5 69 47.8
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 9.7e-06 57.4 63 39.7


User provided reference genes

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