Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.2e-112 409.8 205 100.0
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 6.0e-104 380.9 205 94.1
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 5.3e-68 261.5 205 68.3
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.5e-62 242.7 205 62.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.0e-59 233.0 203 59.6
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.7e-58 229.9 202 62.9
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.5e-58 228.0 206 58.3
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.4e-57 226.9 203 58.1
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 3.2e-57 225.7 203 58.6
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 4.2e-57 225.3 207 59.9
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 7.2e-57 224.6 181 61.3
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 7.2e-57 224.6 204 59.3
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 4.6e-56 221.9 205 59.0
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.0e-55 219.2 203 59.6
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 3.0e-55 219.2 205 58.0
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 3.9e-55 218.8 175 62.9
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 6.7e-55 218.0 185 59.5
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.9e-54 216.5 168 62.5
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.9e-54 216.5 206 55.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.9e-54 216.5 201 60.7
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.3e-54 215.7 200 58.0
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 5.7e-54 214.9 176 64.8
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.3e-53 213.8 184 62.0
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.6e-53 213.4 174 62.6
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.7e-53 212.2 201 56.2
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 3.7e-53 212.2 184 61.4
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 6.3e-53 211.5 190 66.3
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 6.3e-53 211.5 177 62.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 8.2e-53 211.1 190 65.8
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.1e-52 210.7 203 59.6
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.4e-52 210.3 204 56.4
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.8e-52 209.9 201 58.2
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.8e-52 209.9 203 59.6
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.4e-52 209.5 175 62.3
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 6.9e-52 208.0 185 62.7
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 9.1e-52 207.6 205 54.6
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.0e-51 206.5 201 57.7
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 3.4e-51 205.7 193 57.0
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.4e-51 205.7 164 67.7
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 5.9e-51 204.9 268 46.3
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.3e-50 203.8 177 61.6
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 2.2e-50 203.0 163 67.5
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.9e-50 202.6 160 65.0
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 3.8e-50 202.2 198 55.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 5.0e-50 201.8 172 59.9
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 5.0e-50 201.8 167 67.1
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 6.5e-50 201.4 197 54.3
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.1e-49 200.7 191 58.1
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.4e-49 200.3 160 65.6
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.4e-49 200.3 204 56.4
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.4e-49 200.3 211 52.6
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.9e-49 199.9 189 57.7
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.9e-49 199.9 156 64.1
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.9e-49 199.9 179 59.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 3.2e-49 199.1 190 56.3
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.2e-49 199.1 174 62.1
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 4.2e-49 198.7 166 64.5
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 7.2e-49 198.0 190 56.8
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 7.2e-49 198.0 200 55.5
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 7.2e-49 198.0 201 56.2
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.6e-48 196.8 188 56.9
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 2.1e-48 196.4 166 64.5
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.7e-48 196.1 176 58.5
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.7e-48 196.1 173 61.3
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.6e-48 195.3 170 59.4
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.4e-47 193.7 174 56.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 165 65.5
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 165 65.5
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 165 65.5
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 170 61.8
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.3e-47 193.0 175 57.7
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.3e-47 193.0 189 55.0
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 2.3e-47 193.0 157 64.3
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 3.9e-47 192.2 200 52.5
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.9e-47 192.2 164 61.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 5.1e-47 191.8 176 57.4
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 8.8e-47 191.0 176 56.8
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 8.8e-47 191.0 203 53.2
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 8.8e-47 191.0 167 61.1
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.5e-46 190.3 209 51.2
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 4.4e-46 188.7 182 55.5
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 9.7e-46 187.6 188 54.3
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 9.7e-46 187.6 164 59.8
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 9.7e-46 187.6 189 54.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.7e-45 186.8 188 54.3
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.7e-45 186.8 153 64.1
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 4.8e-45 185.3 187 55.1
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.2e-45 184.5 190 53.7
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.1e-44 184.1 142 64.1
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.4e-44 183.7 158 67.7
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.8e-44 183.3 146 66.4
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 6.9e-44 181.4 175 57.7
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.5e-41 172.9 131 65.6
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.1e-40 169.9 167 56.9
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 7.9e-40 167.9 160 56.9
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-39 166.8 194 46.9
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.6e-38 162.9 177 50.8
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.2e-37 159.8 177 50.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 6.3e-37 158.3 180 49.4
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-36 156.8 148 62.2
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.2e-35 154.1 119 65.5
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.0e-35 153.3 183 48.6
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 4.5e-35 152.1 118 65.3
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 7.7e-35 151.4 174 52.3
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.2e-32 144.1 186 44.6
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 3.0e-31 139.4 142 52.8
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 5.2e-31 138.7 123 63.4
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 6.7e-31 138.3 142 52.1
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 9.7e-30 134.4 174 44.8
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 9.7e-30 134.4 125 61.6
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 3.7e-29 132.5 145 51.7
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.4e-28 130.6 162 48.1
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.4e-28 130.6 162 48.1
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 2.4e-28 129.8 189 43.9
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 9.1e-28 127.9 147 56.5
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 5.0e-26 122.1 108 57.4
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.5e-25 118.6 152 46.1
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 5.5e-25 118.6 113 61.1
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.2e-24 117.5 167 43.1
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 5.2e-23 112.1 81 65.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.2e-22 110.9 180 37.2
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 9.8e-22 107.8 110 52.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 6.3e-21 105.1 120 50.8
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.3e-21 105.1 90 58.9
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.1e-20 104.4 93 59.1
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 4.4e-14 82.4 76 57.9
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.7e-13 79.3 78 55.1
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 5.4e-12 75.5 74 58.1
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.9e-09 67.0 160 36.2
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-08 63.2 89 37.1
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.8e-08 63.2 44 59.1
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-07 60.8 40 65.0
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 7.5e-06 55.1 42 57.1


User provided reference genes

Program Settings