Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 0.0e+00 1119.8 775 100.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.5e-253 879.8 839 70.0
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 4.9e-74 283.5 203 73.9
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.4e-67 260.4 796 38.8
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.4e-67 260.4 218 67.9
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 6.4e-66 256.5 197 70.6
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 8.4e-66 256.1 217 65.9
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.1e-65 255.8 253 64.0
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 4.2e-65 253.8 202 67.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 5.4e-65 253.4 203 67.5
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.0e-63 247.7 212 65.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 5.1e-63 246.9 219 63.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.1e-62 245.7 203 65.0
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 4.3e-62 243.8 209 66.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 4.3e-62 243.8 216 64.8
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.3e-62 243.0 202 71.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.3e-61 242.3 256 58.6
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.8e-61 241.1 221 65.2
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.6e-61 240.7 214 62.6
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 3.6e-61 240.7 253 55.7
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 8.1e-61 239.6 206 64.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.1e-60 239.2 216 65.3
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.8e-60 238.4 217 64.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.4e-60 238.0 201 67.2
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.3e-60 236.9 216 63.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 2.0e-59 235.0 218 62.8
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.2e-58 231.5 219 63.5
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.3e-55 222.2 213 62.9
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.6e-54 216.9 208 61.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 7.4e-54 216.5 206 61.2
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.4e-54 216.5 206 61.2
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.3e-53 215.7 206 61.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.6e-53 215.3 219 59.4
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.8e-53 213.8 206 60.7
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.2e-51 209.1 209 60.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.2e-51 209.1 168 69.6
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 4.5e-51 207.2 220 57.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.3e-50 205.7 251 52.6
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.3e-50 205.7 199 61.3
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.7e-50 205.3 250 53.2
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.9e-50 203.8 215 59.5
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.5e-49 201.4 207 57.5
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.5e-49 201.4 207 57.5
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.5e-49 201.4 210 57.6
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 2.5e-49 201.4 245 54.3
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 4.2e-49 200.7 201 60.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 4.2e-49 200.7 205 58.0
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.5e-49 200.3 213 55.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.5e-49 200.3 145 73.8
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.1e-49 199.9 839 37.3
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 7.1e-49 199.9 207 58.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 7.1e-49 199.9 268 49.6
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.3e-49 199.5 210 58.6
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 9.3e-49 199.5 210 58.6
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.3e-49 199.5 198 57.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.2e-48 199.1 219 57.1
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.2e-48 199.1 163 66.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-48 198.0 212 59.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 4.6e-48 197.2 147 72.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.6e-48 197.2 142 75.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.0e-48 196.8 205 57.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.9e-48 196.4 212 58.0
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 3.0e-47 194.5 208 58.7
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 6.7e-47 193.4 184 64.1
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.7e-47 193.0 250 56.0
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.1e-46 192.6 142 73.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 9.6e-46 189.5 200 57.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.8e-45 188.0 141 72.3
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.8e-45 187.2 196 58.2
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.8e-45 187.2 146 67.1
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 6.3e-45 186.8 144 68.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 8.2e-45 186.4 217 54.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.2e-45 186.4 222 51.4
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.2e-45 186.4 222 51.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.1e-44 186.0 142 70.4
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.8e-44 185.3 208 56.2
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.4e-44 184.9 835 35.9
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.1e-44 184.5 152 68.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.1e-44 184.5 141 70.9
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.5e-43 182.2 177 59.3
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.9e-43 180.3 152 67.1
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 7.6e-43 179.9 179 59.2
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.0e-42 179.5 217 51.6
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.3e-42 179.1 161 61.5
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.2e-41 174.5 107 79.4
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.2e-41 174.5 105 81.0
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 4.2e-41 174.1 169 60.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.2e-40 172.6 208 51.9
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.1e-40 171.8 710 35.5
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 3.5e-40 171.0 132 70.5
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-40 171.0 105 79.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.3e-39 169.1 113 78.8
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.8e-39 168.7 109 78.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.3e-39 168.3 113 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.1e-38 166.0 164 56.1
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.5e-38 164.9 164 56.1
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.7e-38 163.7 196 54.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 9.7e-38 162.9 105 77.1
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 9.7e-38 162.9 734 38.3
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.3e-37 162.5 166 54.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.3e-37 162.5 128 68.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-36 158.7 886 38.6
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.4e-36 158.3 129 66.7
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 6.9e-36 156.8 214 49.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 9.0e-36 156.4 164 55.5
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.5e-35 155.6 174 52.3
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.0e-34 152.9 809 34.5
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.0e-34 152.9 812 37.7
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.3e-34 152.5 118 68.6
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.5e-33 148.3 815 31.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.5e-33 148.3 98 79.6
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-32 146.0 132 65.2
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.6e-32 145.6 255 40.8
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-32 144.8 92 77.2
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.8e-31 142.1 90 74.4
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 3.0e-31 141.4 177 50.8
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.3e-29 136.0 779 35.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.8e-29 134.8 956 33.6
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.8e-29 134.8 181 47.5
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 4.8e-29 134.0 139 55.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.8e-28 132.1 80 80.0
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.1e-28 129.8 151 55.6
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.1e-28 129.8 151 55.6
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 7.7e-27 126.7 111 59.5
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.3e-26 125.9 114 59.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.8e-26 124.4 109 63.3
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.5e-26 123.2 121 57.9
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.2e-25 121.3 109 61.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.2e-24 119.4 824 33.6
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.1e-24 118.6 105 61.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.8e-23 115.5 106 58.5
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 3.0e-23 114.8 104 59.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 5.1e-23 114.0 102 58.8
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.7e-23 113.6 129 49.6
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 8.8e-23 113.2 104 58.7
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.1e-22 112.8 913 31.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.1e-22 112.8 111 57.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.0e-22 112.1 101 59.4
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.0e-22 112.1 106 57.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 3.3e-22 111.3 107 57.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.3e-21 109.4 157 43.9
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-21 109.0 103 60.2
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.8e-21 108.2 135 54.8
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.1e-20 104.8 170 47.6
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.6e-19 101.7 100 57.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.5e-19 101.3 107 56.1
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 2.9e-18 98.2 633 35.9
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-16 92.4 52 78.8
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.1e-16 92.0 109 49.5
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.7e-16 91.7 106 52.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 4.7e-16 90.9 101 45.5
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 4.4e-14 84.3 162 34.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 5.7e-14 84.0 167 40.1
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.2e-13 82.0 93 46.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.3e-13 80.5 739 32.7
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 6.3e-13 80.5 52 78.8
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.3e-12 77.4 60 73.3
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.7e-11 75.1 78 56.4
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.1e-09 69.7 67 50.7
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.7e-08 65.1 62 56.5
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.7e-08 65.1 117 41.0
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.8e-07 60.1 839 29.4


User provided reference genes

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