Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 7.2e-311 1069.7 529 100.0
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.8e-269 930.2 562 83.5
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 4.3e-154 548.9 530 55.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 8.1e-153 544.7 525 54.7
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 4.4e-151 538.9 520 54.4
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 5.8e-151 538.5 541 53.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.0e-148 528.5 540 53.5
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.4e-144 517.3 540 52.4
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.4e-141 507.3 541 52.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.1e-136 489.6 483 54.0
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 8.7e-131 471.5 512 50.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 9.6e-130 468.0 528 48.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.1e-129 466.8 497 51.3
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.6e-127 459.9 524 49.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.8e-127 458.8 534 48.3
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-126 457.6 381 61.7
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.0e-119 433.7 487 49.9
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.2e-117 426.4 510 46.9
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 6.7e-115 418.7 590 43.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.7e-115 418.7 493 46.0
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.5e-114 416.8 530 44.7
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.6e-113 414.1 498 47.2
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.8e-113 412.5 490 47.8
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.4e-112 411.0 498 47.2
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.4e-112 410.2 492 48.4
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.3e-112 409.1 513 46.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.6e-111 406.8 390 55.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.4e-111 406.4 497 45.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 4.5e-111 406.0 370 57.8
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.7e-108 396.7 522 45.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.6e-108 396.0 476 46.8
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 7.9e-108 395.2 532 44.7
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.1e-104 384.8 508 43.7
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 5.3e-104 382.5 514 43.4
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.5e-103 379.4 503 43.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-102 378.3 512 42.2
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-101 374.8 481 45.5
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.2e-100 371.3 547 39.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 4.6e-100 369.4 501 43.1
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 7.9e-100 368.6 502 42.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 4.1e-96 356.3 533 40.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 6.9e-96 355.5 525 43.4
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.4e-95 353.2 502 41.8
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.7e-94 350.9 520 41.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 6.5e-94 349.0 527 43.6
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.5e-93 347.1 520 40.4
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.2e-93 346.3 510 41.0
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.7e-92 342.8 498 40.0
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.1e-92 342.4 510 40.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.3e-91 340.5 510 40.0
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.3e-91 340.5 510 40.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.3e-91 340.5 529 38.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.9e-91 339.7 469 42.4
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 5.1e-91 339.3 538 38.7
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.8e-91 338.6 469 42.0
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.0e-90 337.4 501 40.9
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.7e-89 333.2 590 37.3
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 7.0e-88 328.9 507 36.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.6e-87 327.0 519 37.2
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.3e-86 324.7 516 37.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.2e-85 320.1 489 39.1
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 4.2e-85 319.7 486 39.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.2e-85 319.7 450 42.2
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.5e-85 319.3 524 38.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.6e-84 316.6 519 37.6
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 4.7e-84 316.2 514 36.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.0e-83 315.1 396 46.0
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.3e-83 313.9 516 37.6
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.5e-82 311.2 486 39.1
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.0e-82 310.8 532 36.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.0e-82 310.8 541 37.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.4e-82 308.9 510 38.4
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.8e-81 306.2 550 35.8
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.8e-81 306.2 550 35.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-80 305.1 429 42.0
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.4e-80 304.7 520 35.0
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.8e-80 304.3 484 39.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.5e-79 299.7 529 36.5
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 5.0e-78 296.2 537 35.4
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 6.5e-78 295.8 522 35.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-77 295.0 433 39.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.2e-77 293.1 528 36.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.7e-76 290.4 532 33.6
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.7e-76 289.7 529 36.9
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 6.1e-76 289.3 525 36.6
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.0e-75 287.0 543 34.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.7e-74 282.7 524 37.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.7e-74 282.7 523 36.3
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.3e-73 281.6 533 35.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 4.8e-73 279.6 499 37.1
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 4.8e-73 279.6 450 39.3
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-72 278.5 516 33.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-72 278.5 471 35.7
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.8e-72 277.7 389 39.8
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.6e-71 274.6 495 37.2
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.0e-71 274.2 474 36.7
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 5.9e-71 272.7 513 36.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.2e-70 270.8 467 35.3
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.9e-70 270.4 522 35.2
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.2e-69 266.5 396 38.9
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 7.2e-69 265.8 525 33.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 9.4e-69 265.4 265 52.1
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.2e-68 265.0 274 53.6
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.6e-68 264.6 527 34.3
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.7e-68 263.1 483 36.2
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.7e-68 263.1 507 35.5
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 6.1e-68 262.7 516 33.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.0e-68 262.3 492 35.0
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.8e-67 261.2 465 35.9
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.8e-67 258.8 464 35.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.6e-66 257.3 529 35.3
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.4e-66 256.9 442 35.7
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.4e-66 256.9 493 33.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-65 254.6 425 36.9
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.8e-65 253.8 460 35.2
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 7.0e-64 249.2 490 34.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.5e-63 246.9 528 35.4
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 7.7e-63 245.7 524 31.5
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.9e-62 243.8 488 34.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.0e-62 243.0 492 34.6
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.9e-61 241.1 515 33.8
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.6e-60 238.0 523 33.3
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.1e-60 236.1 532 31.4
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.8e-59 234.6 494 34.8
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.6e-58 230.7 489 34.2
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.6e-58 230.7 520 31.0
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 9.8e-58 228.8 501 33.5
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-57 228.0 485 32.2
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.7e-57 226.9 521 30.5
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.7e-57 226.9 521 30.9
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.1e-56 225.3 503 31.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.1e-56 223.4 503 32.6
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 4.5e-55 219.9 527 30.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.9e-55 219.5 511 33.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.6e-54 216.1 465 33.1
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 6.6e-54 216.1 531 33.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 6.1e-52 209.5 507 30.0
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.4e-51 208.4 502 33.5
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.9e-51 205.7 410 35.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 7.5e-50 202.6 415 32.3
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.1e-48 196.8 511 29.2
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.0e-46 192.2 506 29.6
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.3e-45 187.2 250 40.4
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 9.5e-45 185.7 244 44.7
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.4e-40 171.8 261 38.3
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.4e-40 169.9 288 36.1
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-39 168.7 266 37.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-36 158.3 289 36.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.1e-36 157.9 255 35.3
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 4.7e-36 156.8 282 35.1
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-35 155.2 265 37.0
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.2e-35 153.3 262 37.0
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 8.9e-35 152.5 266 38.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.2e-33 147.9 261 34.9
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.4e-32 145.2 271 33.2
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.4e-32 143.3 253 34.0
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 7.8e-31 139.4 305 30.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.3e-30 138.7 253 33.6
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 7.1e-24 116.3 247 30.8
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.6e-23 113.6 265 33.2
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.3e-22 111.3 237 32.1
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 8.7e-22 109.4 178 41.0
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-21 109.0 242 34.3
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.6e-20 105.1 479 26.9
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 2.8e-20 104.4 138 42.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.6e-18 97.8 211 31.8
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.2e-17 94.7 148 37.2
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 4.6e-15 87.0 131 38.9
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 7.8e-15 86.3 235 28.5
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.3e-13 80.9 107 35.5
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.3e-13 80.5 206 30.1
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 2.6e-10 71.2 196 31.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 3.4e-10 70.9 184 30.4
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.9e-09 67.8 184 29.9
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 6.4e-09 66.6 271 26.6
MELO3C006802.2 Cucumis melo HOM05D000885 ORTHO05D001238 2.3e-06 58.2 63 46.0


User provided reference genes

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