Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.9e-101 372.5 179 100.0
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 7.8e-100 367.1 179 98.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.2e-84 316.6 175 86.3
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 4.3e-82 308.1 174 81.6
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.3e-81 306.6 167 83.2
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 2.4e-80 302.4 174 80.5
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.4e-80 302.4 181 76.8
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 5.3e-80 301.2 174 79.3
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 9.0e-80 300.4 170 79.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 9.0e-80 300.4 168 82.7
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.2e-79 300.1 174 78.7
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.5e-79 299.7 168 81.0
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.5e-79 299.7 170 80.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 3.4e-79 298.5 166 80.7
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 4.4e-79 298.1 170 80.6
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.4e-79 298.1 177 77.4
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 5.8e-79 297.7 179 77.7
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 5.8e-79 297.7 168 79.8
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 7.6e-79 297.4 171 77.2
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 7.6e-79 297.4 168 80.4
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 9.9e-79 297.0 170 79.4
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 9.9e-79 297.0 170 80.0
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 1.3e-78 296.6 167 79.6
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.2e-78 295.8 170 79.4
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 2.9e-78 295.4 170 77.6
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 2.9e-78 295.4 167 80.8
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 2.9e-78 295.4 178 76.4
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.9e-78 295.4 170 80.0
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.9e-78 295.4 170 79.4
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 3.8e-78 295.0 170 77.1
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.8e-78 295.0 176 76.7
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 3.8e-78 295.0 174 79.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 4.9e-78 294.7 174 76.4
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 4.9e-78 294.7 181 76.2
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 6.4e-78 294.3 170 77.6
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 6.4e-78 294.3 168 78.6
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 8.4e-78 293.9 177 75.1
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 8.4e-78 293.9 175 77.7
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 8.4e-78 293.9 175 78.3
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.1e-77 293.5 173 76.9
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.1e-77 293.5 173 76.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.9e-77 292.7 168 79.8
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.9e-77 292.7 167 80.2
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.9e-77 292.7 167 80.2
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.2e-77 292.0 170 77.6
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 3.2e-77 292.0 174 75.3
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 169 76.9
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 3.2e-77 292.0 173 76.3
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 7.1e-77 290.8 167 79.0
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 7.1e-77 290.8 168 80.4
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 7.1e-77 290.8 170 75.9
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 9.3e-77 290.4 167 78.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.2e-76 290.0 176 76.1
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.2e-76 290.0 170 75.3
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.2e-76 290.0 176 76.1
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.6e-76 289.7 166 78.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.1e-76 289.3 174 74.7
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 2.7e-76 288.9 166 78.3
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 3.5e-76 288.5 176 73.3
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 3.5e-76 288.5 166 76.5
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 3.5e-76 288.5 170 75.9
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.6e-76 288.1 167 78.4
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 4.6e-76 288.1 169 76.3
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 4.6e-76 288.1 186 73.7
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 7.8e-76 287.3 166 77.7
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.0e-75 287.0 174 77.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.3e-75 286.6 167 76.6
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.3e-75 286.6 167 77.2
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.3e-75 286.6 167 77.8
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.3e-75 286.6 167 77.8
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.3e-75 286.6 167 77.8
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.7e-75 286.2 175 74.9
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.7e-75 286.2 169 75.1
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 77.1
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 78.3
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 3.0e-75 285.4 167 75.4
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.0e-75 285.4 167 77.8
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 3.0e-75 285.4 167 79.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 5.1e-75 284.6 173 75.1
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 5.1e-75 284.6 170 74.7
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 5.1e-75 284.6 166 77.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 5.1e-75 284.6 166 77.7
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 6.6e-75 284.3 174 74.1
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.1e-74 283.5 176 73.9
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.1e-74 283.5 169 75.1
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 1.9e-74 282.7 169 75.1
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.9e-74 282.7 167 77.2
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 3.3e-74 282.0 168 77.4
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.3e-74 281.6 202 66.8
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 4.3e-74 281.6 176 73.3
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.6e-74 281.2 164 78.7
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 9.6e-74 280.4 169 74.6
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-73 280.0 167 75.4
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.3e-73 280.0 162 78.4
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.6e-73 279.6 167 75.4
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.6e-73 279.6 167 77.2
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.1e-73 279.3 166 75.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.1e-73 279.3 161 82.6
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 3.6e-73 278.5 176 71.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 4.8e-73 278.1 166 72.3
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 4.8e-73 278.1 167 74.3
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.4e-72 276.6 157 78.3
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-72 276.6 173 71.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.4e-72 276.6 166 73.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.8e-72 276.2 168 77.4
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 3.1e-72 275.4 166 75.3
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 4.0e-72 275.0 168 76.2
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 4.0e-72 275.0 168 76.2
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 5.3e-72 274.6 166 75.3
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 9.0e-72 273.9 166 77.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.5e-71 273.1 168 76.2
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 3.4e-71 271.9 166 74.7
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.4e-71 271.9 174 68.4
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 4.5e-71 271.6 168 70.8
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.6e-71 270.8 177 71.8
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.8e-70 268.5 172 68.6
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.9e-70 268.1 153 79.7
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 8.4e-70 267.3 174 70.7
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 2.4e-69 265.8 175 66.9
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.1e-69 264.2 235 57.4
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 6.7e-67 257.7 173 67.1
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.3e-66 255.4 150 78.7
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 3.3e-66 255.4 167 68.9
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 9.6e-66 253.8 183 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.8e-65 252.3 165 67.3
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 2.4e-64 249.2 168 64.9
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 4.0e-64 248.4 168 67.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.0e-62 243.8 171 67.8
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.4e-61 240.0 167 65.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 6.0e-60 234.6 163 64.4
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 6.0e-60 234.6 168 65.5
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 5.7e-58 228.0 162 63.6
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.6e-57 226.5 166 63.9
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 2.4e-56 222.6 163 60.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 2.1e-52 209.5 169 55.6
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 5.1e-51 204.9 107 84.1
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.4e-48 196.8 109 83.5
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.1e-45 187.2 122 69.7
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 7.2e-45 184.5 180 48.9
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.6e-44 181.8 112 70.5
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 5.1e-43 178.3 108 74.1
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 1.1e-42 177.2 179 50.3
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.5e-42 176.8 112 73.2
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 3.1e-40 169.1 102 72.5
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.5e-39 166.8 174 52.9
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 4.5e-39 165.2 99 74.7
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 5.9e-39 164.9 109 68.8
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 5.9e-39 164.9 109 68.8
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 3.8e-38 162.2 102 70.6
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.8e-35 153.3 85 82.4
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.8e-35 153.3 103 67.0
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 7.4e-34 147.9 172 50.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.6e-28 130.2 76 72.4
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 4.7e-28 128.6 141 51.8
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 4.7e-28 128.6 157 38.9
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.7e-25 120.2 121 53.7
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 5.5e-21 105.1 63 73.0
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.4e-19 100.5 66 68.2
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 3.4e-18 95.9 182 29.1
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.7e-17 92.4 64 62.5
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 7.0e-16 88.2 68 61.8
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.0e-14 84.3 79 49.4
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.0e-14 84.3 65 63.1
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 5.2e-11 72.0 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.5e-07 59.3 48 60.4
PGSC0003DMG400005351 Solanum tuberosum HOM05D000190 ORTHO05D030681 2.9e-06 56.2 39 56.4


User provided reference genes

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