Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 2.6e-29 131.3 64 100.0
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 5.6e-16 87.0 64 78.1
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 9.2e-11 69.7 59 64.4
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 1.2e-10 69.3 59 64.4
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 1.6e-10 68.9 64 62.5
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 1.6e-10 68.9 61 60.7
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 2.7e-10 68.2 61 59.0
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 3.5e-10 67.8 59 62.7
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 3.5e-10 67.8 57 64.9
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 6.0e-10 67.0 61 60.7
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 1.0e-09 66.2 50 70.0
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.0e-09 66.2 56 62.5
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 2.3e-09 65.1 64 57.8
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 2.3e-09 65.1 64 60.9
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 3.0e-09 64.7 64 57.8
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 3.9e-09 64.3 63 60.3
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 5.0e-09 63.9 57 61.4
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 5.0e-09 63.9 59 55.9
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 6.6e-09 63.5 61 59.0
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 6.6e-09 63.5 59 62.7
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 6.6e-09 63.5 64 59.4
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 6.6e-09 63.5 64 59.4
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 8.6e-09 63.2 55 63.6
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 1.1e-08 62.8 57 61.4
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 1.1e-08 62.8 55 65.5
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 1.5e-08 62.4 60 60.0
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 1.5e-08 62.4 59 62.7
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 1.9e-08 62.0 58 60.3
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 1.9e-08 62.0 61 55.7
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 1.9e-08 62.0 61 57.4
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 1.9e-08 62.0 61 59.0
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 2.5e-08 61.6 50 68.0
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 2.5e-08 61.6 49 65.3
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 4.3e-08 60.8 61 54.1
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 4.3e-08 60.8 61 54.1
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 4.3e-08 60.8 61 54.1
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 4.3e-08 60.8 55 60.0
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 5.6e-08 60.5 57 61.4
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 5.6e-08 60.5 62 56.5
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 5.6e-08 60.5 62 59.7
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 7.3e-08 60.1 57 56.1
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 7.3e-08 60.1 57 56.1
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 9.5e-08 59.7 50 68.0
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 9.5e-08 59.7 60 53.3
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 9.5e-08 59.7 60 53.3
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 9.5e-08 59.7 61 55.7
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 9.5e-08 59.7 51 60.8
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.2e-07 59.3 61 59.0
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 1.6e-07 58.9 58 55.2
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.6e-07 58.9 49 63.3
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 2.1e-07 58.5 61 52.5
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 2.1e-07 58.5 61 57.4
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 2.1e-07 58.5 61 57.4
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 2.8e-07 58.2 50 62.0
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 2.8e-07 58.2 64 57.8
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 3.6e-07 57.8 50 62.0
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 4.7e-07 57.4 50 64.0
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 4.7e-07 57.4 50 64.0
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 6.2e-07 57.0 50 62.0
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 6.2e-07 57.0 50 62.0
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 6.2e-07 57.0 50 62.0
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 8.1e-07 56.6 50 62.0
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 1.1e-06 56.2 50 62.0
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 1.1e-06 56.2 55 54.5
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.4e-06 55.8 51 60.8
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 1.4e-06 55.8 49 61.2
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 1.4e-06 55.8 56 55.4
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 2.3e-06 55.1 60 51.7
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 5.2e-06 53.9 50 62.0
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 5.2e-06 53.9 60 50.0


User provided reference genes

Program Settings