Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 6.9e-167 590.5 283 100.0
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 7.4e-145 517.3 313 81.8
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 2.4e-143 512.3 284 87.0
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.8e-138 496.1 284 82.0
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 8.7e-138 493.8 283 81.3
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.5e-137 493.0 280 81.4
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 7.4e-137 490.7 283 81.6
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.2e-136 489.2 284 80.3
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 3.7e-136 488.4 284 81.3
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 4.8e-136 488.0 282 79.4
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.4e-135 486.5 283 81.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.4e-135 486.5 283 80.9
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 2.4e-135 485.7 283 80.9
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.2e-134 483.4 284 79.6
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.0e-134 482.6 283 78.8
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 3.4e-134 481.9 283 81.3
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 4.5e-134 481.5 284 80.6
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 5.9e-134 481.1 284 78.9
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 5.9e-134 481.1 284 79.2
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 7.6e-134 480.7 283 79.5
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 7.6e-134 480.7 284 80.6
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.0e-133 480.3 280 80.7
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.3e-133 479.9 284 79.2
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.7e-133 479.6 284 80.3
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.2e-133 479.2 284 80.6
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.9e-133 478.8 284 80.6
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.9e-133 478.8 281 80.8
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 2.9e-133 478.8 280 80.4
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.5e-133 477.6 281 80.4
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.9e-132 476.1 283 78.1
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 2.5e-132 475.7 281 79.7
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.2e-132 475.3 281 80.1
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 5.5e-132 474.6 284 78.9
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 5.5e-132 474.6 278 80.2
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 7.2e-132 474.2 283 79.9
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 7.2e-132 474.2 284 77.5
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 9.3e-132 473.8 284 78.2
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.2e-131 473.4 280 78.9
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.1e-131 472.6 283 79.5
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.6e-131 471.9 283 79.9
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 6.1e-131 471.1 283 78.8
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 6.1e-131 471.1 280 79.6
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 7.9e-131 470.7 280 78.2
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.3e-130 469.2 280 79.3
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 2.3e-130 469.2 283 78.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 5.1e-130 468.0 288 77.8
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.1e-129 466.8 283 78.4
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 2.5e-129 465.7 282 76.2
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 5.7e-129 464.5 283 77.4
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.3e-128 461.1 284 76.1
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.8e-127 459.5 284 75.7
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.4e-127 459.1 280 75.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.1e-127 458.8 286 76.6
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 4.1e-127 458.4 280 74.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.1e-127 458.4 269 79.2
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.2e-126 456.8 281 74.0
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.2e-126 456.8 269 78.4
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 74.0
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 74.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.5e-126 456.4 283 75.3
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 2.0e-126 456.1 281 74.0
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 2.0e-126 456.1 281 74.0
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 2.6e-126 455.7 283 74.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 3.4e-126 455.3 280 74.3
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.4e-126 455.3 282 75.9
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 74.4
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 7.7e-126 454.1 280 73.6
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 75.2
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 75.9
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.3e-125 453.4 282 75.5
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.7e-125 453.0 281 73.7
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 5.0e-125 451.4 283 73.5
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 6.5e-125 451.1 283 74.6
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 8.5e-125 450.7 281 73.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 1.1e-124 450.3 280 72.9
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.5e-124 449.1 275 78.5
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 4.2e-124 448.4 282 75.2
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.2e-123 446.8 282 74.1
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.2e-123 446.8 250 83.2
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 6.1e-123 444.5 289 72.0
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.9e-122 441.8 274 76.3
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 8.8e-122 440.7 284 72.5
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 9.7e-121 437.2 268 75.7
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.7e-120 436.4 313 68.1
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.4e-119 432.6 284 72.9
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 5.3e-119 431.4 270 74.8
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 6.9e-119 431.0 284 70.1
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.0e-118 429.5 284 72.9
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.0e-117 427.2 298 70.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.8e-117 425.2 284 70.8
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.8e-117 425.2 284 70.8
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 8.5e-117 424.1 281 69.0
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 5.5e-116 421.4 263 77.6
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 4.7e-115 418.3 270 73.7
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.7e-112 409.8 250 76.0
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.6e-110 403.3 284 69.4
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.6e-110 403.3 279 66.7
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.3e-109 400.2 279 66.3
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.8e-106 389.8 261 67.8
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 4.0e-106 388.7 275 66.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 8.8e-106 387.5 251 71.3
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 8.8e-106 387.5 251 70.9
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 7.5e-105 384.4 236 76.3
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.4e-95 353.6 190 84.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.8e-95 353.2 282 58.2
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 5.4e-95 351.7 248 66.9
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 7.0e-95 351.3 279 60.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.7e-93 346.7 422 46.0
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 8.9e-90 334.3 280 56.8
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 9.8e-89 330.9 268 60.8
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 7.8e-86 321.2 415 44.3
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 7.5e-81 304.7 267 56.2
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.3e-77 293.1 167 77.8
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.5e-76 290.4 167 77.2
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 3.3e-76 289.3 176 73.9
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 5.6e-76 288.5 280 48.6
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.6e-73 279.6 143 85.3
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.7e-72 275.8 176 68.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.5e-68 263.8 309 46.0
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.4e-66 257.3 295 47.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 9.9e-65 251.1 179 66.5
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 6.2e-59 231.9 295 43.1
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 8.1e-59 231.5 249 51.4
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-54 217.6 135 78.5
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.0e-53 214.5 142 73.2
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.7e-53 213.8 144 63.2
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.4e-50 204.1 248 47.6
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 8.4e-48 194.9 156 63.5
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-41 174.5 223 40.4
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.1e-34 151.4 111 64.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 4.2e-31 139.4 77 80.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.9e-28 130.6 71 80.3
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.1e-26 123.2 72 70.8
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.1e-26 123.2 72 70.8
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 4.5e-25 119.4 80 72.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 2.9e-24 116.7 92 63.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.9e-23 114.0 75 73.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.5e-23 113.6 76 72.4
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.3e-20 103.2 80 63.8
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.2e-15 86.3 96 49.0
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.0e-13 81.6 85 50.6
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 3.9e-13 79.7 57 68.4
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.5e-08 62.0 101 44.6
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.6e-06 57.8 175 26.9
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 4.7e-06 56.2 50 58.0


User provided reference genes

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