Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 0.0e+00 1520.0 1038 100.0
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 0.0e+00 1349.3 1105 85.6
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 0.0e+00 1290.8 1034 85.3
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 0.0e+00 1261.5 1038 83.8
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.0e-305 1053.5 1047 77.7
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.8e-305 1052.7 1051 77.9
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 6.0e-285 984.6 1044 71.8
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 4.9e-279 964.9 1043 72.8
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.4e-270 936.8 1054 72.1
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.0e-268 930.6 1065 71.2
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.3e-268 929.5 1063 73.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.1e-267 927.2 894 79.0
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.5e-267 926.8 1043 72.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 6.4e-263 911.4 1049 72.8
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 3.5e-261 905.6 1044 68.2
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.9e-260 902.1 1042 73.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.5e-259 900.2 1086 66.3
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.6e-253 880.2 1038 70.9
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.7e-253 879.4 1038 70.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.1e-251 874.0 1044 69.9
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.3e-251 872.1 1050 62.2
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.5e-248 863.6 913 77.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.6e-248 862.8 1049 70.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.0e-247 860.9 1040 70.5
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.9e-247 858.6 1040 68.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 6.5e-247 858.2 1051 69.4
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.3e-246 854.4 1046 65.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.9e-244 849.0 1021 64.5
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.9e-243 846.7 1062 67.4
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.3e-243 845.9 925 76.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.3e-243 845.9 922 76.1
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.2e-242 841.3 1059 67.3
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.1e-241 840.9 1021 70.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-241 840.5 1063 66.9
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.8e-241 840.1 1055 67.9
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.9e-238 830.1 932 74.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.3e-236 823.2 1063 68.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.3e-236 823.2 1056 66.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.3e-236 823.2 1056 63.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.5e-235 819.7 893 76.8
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-235 818.5 893 76.7
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 7.4e-235 818.1 884 76.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.3e-234 817.4 1040 67.7
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.7e-234 817.0 890 75.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 6.3e-234 815.1 1060 62.2
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 6.5e-231 805.1 895 75.6
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.7e-229 799.7 826 79.8
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.4e-228 797.3 1053 65.7
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.4e-228 797.3 828 80.0
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.3e-228 796.6 878 74.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 5.1e-228 795.4 908 67.0
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 8.8e-228 794.7 917 74.5
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.1e-227 794.3 893 74.8
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.5e-227 793.9 893 74.7
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 2.6e-227 793.1 939 71.6
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 3.3e-227 792.7 921 72.6
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 7.4e-227 791.6 1042 66.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.2e-226 790.0 886 73.0
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 9.1e-225 784.6 1056 64.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.2e-224 784.3 984 71.0
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.1e-222 777.7 1041 66.6
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 2.1e-221 773.5 1031 65.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.0e-220 771.2 871 76.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.4e-220 770.8 991 68.7
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.2e-220 768.8 963 70.0
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-219 767.7 1040 66.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.7e-218 763.8 1040 65.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.7e-218 763.8 908 69.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.8e-218 763.1 834 74.5
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.7e-218 762.7 1048 66.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-217 760.8 894 72.4
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.4e-217 760.0 948 69.8
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 7.0e-217 758.4 888 71.6
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.9e-215 753.1 1051 62.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.5e-214 750.7 898 70.3
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.9e-214 750.4 1045 61.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.5e-214 750.0 914 71.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 3.2e-214 749.6 876 71.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 5.5e-214 748.8 951 67.4
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.6e-213 747.3 813 78.1
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 8.0e-213 745.0 1041 61.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.0e-212 744.6 893 73.8
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 6.8e-212 741.9 1034 63.1
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 8.8e-212 741.5 891 70.6
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 9.7e-211 738.0 1050 62.1
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.2e-210 736.9 892 69.2
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.1e-209 732.6 889 69.0
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 7.0e-209 731.9 1035 62.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 4.5e-208 729.2 1043 62.6
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.9e-207 726.5 900 69.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.1e-206 724.5 975 61.8
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.2e-206 723.0 900 70.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 2.0e-203 713.8 1036 62.2
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.0e-203 713.8 892 63.2
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 5.7e-203 712.2 1034 61.9
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.2e-202 710.3 1014 55.9
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.8e-201 707.2 1032 62.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 4.1e-201 706.1 853 69.5
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.4e-201 705.7 854 71.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 7.0e-201 705.3 888 68.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 7.0e-201 705.3 888 68.9
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.0e-200 703.7 1033 61.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 7.7e-200 701.8 915 64.7
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.0e-199 701.4 922 68.3
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.7e-199 700.7 934 65.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 5.0e-199 699.1 918 65.4
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.5e-198 697.6 854 73.2
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.5e-198 696.8 918 68.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.2e-198 695.3 1035 61.3
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-197 694.5 889 68.3
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 8.0e-197 691.8 894 67.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 4.4e-195 686.0 917 66.1
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 5.4e-193 679.1 889 65.2
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.2e-193 678.3 888 68.0
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.9e-191 672.9 872 70.2
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 8.0e-189 665.2 847 61.4
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 6.4e-186 655.6 909 66.8
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 9.2e-185 651.7 906 63.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 3.9e-183 646.4 818 70.2
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 5.0e-183 646.0 890 66.0
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.6e-179 633.6 888 60.1
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 7.5e-179 632.1 889 60.5
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 9.8e-179 631.7 888 59.8
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 9.8e-179 631.7 888 59.8
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 3.7e-178 629.8 793 69.0
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-175 621.3 920 58.0
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.5e-174 617.8 807 64.2
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.8e-172 610.9 897 63.4
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 8.9e-172 608.6 821 66.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.0e-167 595.1 919 64.5
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.1e-167 592.8 689 72.1
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.5e-166 591.3 741 65.7
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 4.3e-166 589.7 689 79.1
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-165 588.2 889 58.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.4e-164 584.7 892 63.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.4e-164 584.7 856 63.6
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 4.0e-164 583.2 887 58.1
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-162 578.2 887 58.2
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-162 576.6 888 58.4
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 4.0e-156 556.6 889 57.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 9.9e-155 552.0 979 52.6
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 2.7e-144 517.3 727 65.5
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.4e-140 504.2 781 51.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-136 491.9 652 76.4
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.2e-136 491.9 982 50.7
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.3e-134 483.8 929 51.1
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 3.2e-129 467.2 801 54.7
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.2e-123 448.7 923 45.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.9e-123 446.4 680 60.0
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.9e-115 419.9 923 53.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.4e-113 415.2 507 70.4
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.7e-112 410.2 1013 43.6
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 3.9e-111 407.1 901 37.2
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.4e-108 397.9 648 72.2
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 5.5e-105 386.7 483 53.2
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.6e-99 367.9 402 63.7
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 7.7e-99 366.3 948 48.2
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.1e-96 358.2 746 51.9
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.4e-92 345.5 651 58.1
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 7.0e-92 343.2 425 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 5.9e-91 340.1 598 63.9
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.2e-89 334.0 485 49.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.0e-74 284.6 272 66.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.3e-69 269.2 329 79.0
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 8.3e-61 240.0 150 78.7
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 7.6e-54 216.9 232 52.2
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.9e-49 202.2 201 55.7
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-46 193.0 358 40.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 8.7e-42 176.8 125 71.2
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-32 146.4 89 77.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.3e-32 146.4 119 63.9
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.6e-32 146.0 88 84.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 4.6e-19 101.3 64 82.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.0e-14 85.9 194 34.0
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.9e-13 82.0 239 69.5
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.1e-12 80.1 62 59.7
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 1.5e-06 59.7 206 27.2


User provided reference genes

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