Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 1.4e-120 436.4 248 100.0
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 8.9e-94 347.4 249 85.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 7.1e-59 231.5 257 61.5
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 4.4e-53 212.2 252 59.5
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 4.4e-53 212.2 248 59.3
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 6.0e-50 201.8 244 58.2
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.3e-49 199.9 242 58.7
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 3.0e-49 199.5 250 52.4
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 3.9e-49 199.1 246 53.7
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 5.1e-49 198.7 244 57.8
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 8.7e-49 198.0 244 57.0
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 7.3e-48 194.9 201 61.7
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 2.2e-44 183.3 213 56.8
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 4.9e-44 182.2 117 79.5
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 4.9e-44 182.2 121 76.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 6.4e-44 181.8 253 48.6
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 1.1e-43 181.0 182 65.4
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 1.9e-43 180.3 121 75.2
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 3.2e-43 179.5 113 80.5
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 5.4e-43 178.7 262 52.3
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 1.2e-42 177.6 119 71.4
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 1.6e-42 177.2 224 58.5
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 1.6e-42 177.2 112 81.2
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 2.1e-42 176.8 246 53.3
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 2.1e-42 176.8 254 50.8
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 2.1e-42 176.8 209 58.9
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 2.1e-42 176.8 106 82.1
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 2.1e-42 176.8 252 54.0
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 3.5e-42 176.0 111 80.2
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 4.6e-42 175.6 224 58.0
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 1.8e-41 173.7 117 77.8
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 1.8e-41 173.7 108 80.6
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 3.9e-41 172.6 243 54.7
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 5.1e-41 172.2 254 53.5
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 8.7e-41 171.4 187 59.4
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 1.9e-40 170.2 249 52.6
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.9e-40 170.2 110 78.2
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.9e-40 170.2 109 78.0
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 2.5e-40 169.9 107 82.2
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.5e-40 169.9 111 79.3
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.5e-40 169.9 111 79.3
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 3.3e-40 169.5 108 76.9
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 4.3e-40 169.1 243 53.5
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 4.3e-40 169.1 247 53.8
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 4.3e-40 169.1 116 73.3
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 4.3e-40 169.1 255 51.4
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 5.6e-40 168.7 125 69.6
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 5.6e-40 168.7 239 54.8
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 7.4e-40 168.3 244 52.5
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 7.4e-40 168.3 124 71.8
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 7.4e-40 168.3 257 51.8
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 9.6e-40 167.9 248 50.8
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 9.6e-40 167.9 256 49.2
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 1.3e-39 167.5 229 53.3
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.3e-39 167.5 248 50.4
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 2.1e-39 166.8 110 74.5
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 2.1e-39 166.8 118 72.9
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 2.8e-39 166.4 243 53.5
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 2.8e-39 166.4 206 58.7
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 2.8e-39 166.4 257 51.4
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 4.8e-39 165.6 240 51.7
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 6.2e-39 165.2 242 55.0
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 8.1e-39 164.9 107 81.3
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.4e-38 164.1 241 47.3
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.4e-38 164.1 244 47.5
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 1.4e-38 164.1 250 53.2
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.8e-38 163.7 116 70.7
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 1.8e-38 163.7 222 51.4
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 2.4e-38 163.3 121 69.4
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 3.1e-38 162.9 236 53.0
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 4.0e-38 162.5 241 53.5
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 4.0e-38 162.5 200 58.0
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.2e-37 161.0 108 75.0
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.2e-37 161.0 250 51.2
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.5e-37 160.6 164 65.9
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.5e-37 160.6 107 74.8
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 2.0e-37 160.2 104 76.0
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 2.0e-37 160.2 247 47.0
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.6e-37 159.8 171 60.2
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.6e-37 159.8 122 68.9
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 5.8e-37 158.7 236 48.7
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 5.8e-37 158.7 205 54.1
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 5.8e-37 158.7 238 52.1
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 5.8e-37 158.7 245 49.0
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 9.9e-37 157.9 112 67.0
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.3e-36 157.5 117 68.4
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 1.7e-36 157.1 164 56.1
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 1.7e-36 157.1 261 47.9
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 2.2e-36 156.8 237 50.6
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 2.2e-36 156.8 237 48.1
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.2e-36 156.8 112 68.8
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 4.9e-36 155.6 111 69.4
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 4.9e-36 155.6 238 48.7
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.9e-36 155.6 110 70.9
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.1e-35 154.5 210 51.9
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 1.1e-35 154.5 245 52.7
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 1.1e-35 154.5 113 68.1
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 1.1e-35 154.5 113 68.1
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.5e-35 153.3 110 68.2
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 3.2e-35 152.9 114 65.8
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.2e-35 152.9 244 47.1
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 5.5e-35 152.1 110 70.0
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 7.1e-35 151.8 177 56.5
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.1e-34 150.2 116 62.1
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 7.9e-34 148.3 237 48.5
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 7.9e-34 148.3 237 48.5
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.3e-33 147.5 109 68.8
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.3e-33 147.5 110 67.3
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 3.0e-33 146.4 240 46.2
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 4.3e-32 142.5 109 68.8
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 5.6e-32 142.1 243 46.9
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 7.4e-32 141.7 252 47.6
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.3e-31 141.0 253 45.5
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.6e-31 140.6 107 64.5
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 1.6e-31 140.6 107 66.4
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 2.1e-31 140.2 112 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 6.2e-31 138.7 102 66.7
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 6.2e-31 138.7 107 64.5
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 6.2e-31 138.7 107 64.5
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 6.2e-31 138.7 107 64.5
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 6.2e-31 138.7 107 64.5
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 6.2e-31 138.7 107 64.5
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 6.2e-31 138.7 107 65.4
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 8.2e-31 138.3 107 64.5
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.4e-30 137.5 107 64.5
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.4e-30 137.5 290 43.1
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.8e-30 137.1 102 69.6
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 9.0e-30 134.8 104 66.3
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 4.5e-29 132.5 97 64.9
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 7.6e-29 131.7 103 61.2
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.3e-28 131.0 298 41.6
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 2.9e-28 129.8 107 62.6
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 8.4e-28 128.3 110 62.7
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 3.2e-27 126.3 95 66.3
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.1e-24 117.9 104 60.6
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.3e-23 114.4 85 65.9
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 5.5e-19 99.0 105 47.6
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.3e-15 87.8 200 37.0
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 2.8e-15 86.7 64 75.0
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 1.8e-09 67.4 124 45.2
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 3.9e-09 66.2 103 44.7
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 3.9e-09 66.2 103 44.7
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 5.1e-09 65.9 103 44.7
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 1.5e-08 64.3 102 44.1
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 1.5e-08 64.3 102 44.1
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 2.0e-08 63.9 190 40.5
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 3.3e-08 63.2 103 41.7
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 5.7e-08 62.4 102 39.2
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 1.7e-07 60.8 102 38.2
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 2.2e-07 60.5 101 41.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 2.2e-07 60.5 101 41.6
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.7e-07 59.7 102 39.2
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 3.7e-07 59.7 102 39.2
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 4.8e-07 59.3 190 39.5
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 6.3e-07 58.9 102 41.2
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 6.3e-07 58.9 102 41.2
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 8.2e-07 58.5 101 37.6
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 8.2e-07 58.5 102 37.3
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 1.4e-06 57.8 103 37.9
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 1.8e-06 57.4 102 38.2
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 2.4e-06 57.0 100 35.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 2.4e-06 57.0 100 35.0
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.4e-06 57.0 101 38.6
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 2.4e-06 57.0 102 40.2
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.1e-06 56.6 103 36.9
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 3.1e-06 56.6 103 36.9
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 3.1e-06 56.6 101 36.6
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 4.1e-06 56.2 102 37.3
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 4.1e-06 56.2 103 38.8
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 4.1e-06 56.2 103 36.9
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 4.1e-06 56.2 102 38.2
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 4.1e-06 56.2 100 40.0
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 5.3e-06 55.8 101 35.6
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 5.3e-06 55.8 96 38.5
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 7.0e-06 55.5 102 39.2
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 9.1e-06 55.1 102 35.3
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 9.1e-06 55.1 101 39.6
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 9.1e-06 55.1 101 35.6


User provided reference genes

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