Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.7e-136 488.4 283 100.0
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 6.3e-120 434.5 283 86.2
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.6e-81 306.2 246 75.6
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.1e-60 237.7 286 56.3
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.2e-57 227.6 284 53.5
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 4.2e-47 192.6 269 53.5
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 5.4e-47 192.2 275 48.4
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 1.5e-44 184.1 278 49.3
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 5.6e-44 182.2 294 46.3
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 8.1e-43 178.3 273 48.0
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.1e-42 177.9 263 47.5
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.4e-42 176.8 279 47.0
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 5.3e-42 175.6 277 48.7
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.4e-41 172.9 329 40.7
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.7e-40 170.6 283 45.2
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.0e-37 159.8 285 44.9
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.5e-36 157.5 287 43.6
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.5e-36 156.8 280 45.7
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.3e-36 156.4 269 47.6
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.8e-35 153.3 283 46.3
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.2e-35 152.1 299 43.8
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-34 151.4 287 42.2
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.8e-34 150.6 272 46.3
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.4e-34 150.2 287 42.9
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.2e-33 147.9 269 45.7
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 9.9e-33 144.8 294 43.5
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.7e-32 144.1 272 41.9
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.9e-32 142.5 296 38.9
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.2e-31 139.4 270 46.3
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.1e-31 138.7 272 40.8
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.3e-29 134.4 296 38.5
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.3e-29 133.7 286 40.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.5e-28 131.0 255 41.2
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 5.6e-28 129.0 273 39.9
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.6e-27 127.5 276 40.2
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.6e-27 127.5 286 42.7
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.8e-27 126.7 267 41.9
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 3.1e-26 123.2 285 36.8
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.5e-25 120.9 304 39.1
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 2.0e-25 120.6 274 43.8
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.3e-24 117.9 271 35.8
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 2.2e-24 117.1 265 39.2
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 2.9e-24 116.7 278 39.2
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 3.8e-24 116.3 299 36.1
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.2e-23 113.2 122 57.4
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 9.3e-23 111.7 153 58.8
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 9.3e-23 111.7 277 37.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 9.3e-23 111.7 297 33.7
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.1e-22 110.5 284 39.1
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 2.1e-22 110.5 268 38.4
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 4.6e-22 109.4 264 39.0
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.3e-21 107.1 281 36.7
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 3.0e-21 106.7 257 42.0
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.5e-20 104.4 259 37.5
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 3.3e-20 103.2 323 35.6
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 3.3e-20 103.2 200 44.5
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 4.3e-20 102.8 287 35.9
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 4.3e-20 102.8 315 34.3
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.7e-20 102.4 218 39.4
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 7.4e-20 102.1 282 34.0
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 7.4e-20 102.1 267 39.0
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 9.7e-20 101.7 256 36.7
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 2.2e-19 100.5 290 39.7
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 6.3e-19 99.0 276 37.7
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.4e-18 97.8 297 34.3
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 4.1e-18 96.3 183 41.0
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 5.3e-18 95.9 148 48.6
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 6.9e-18 95.5 151 45.0
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 6.9e-18 95.5 269 39.8
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 9.0e-18 95.1 268 31.7
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.2e-17 94.7 267 34.1
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.5e-17 94.4 263 36.1
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.0e-17 94.0 282 37.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.0e-17 94.0 120 51.7
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 3.4e-17 93.2 177 43.5
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 4.5e-17 92.8 274 34.7
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 7.7e-17 92.0 274 32.8
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.3e-16 91.3 165 45.5
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.7e-16 90.9 84 61.9
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 3.8e-16 89.7 279 37.6
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 5.0e-16 89.4 291 39.2
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.9e-15 87.4 152 48.7
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.5e-15 87.0 230 37.4
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 4.2e-15 86.3 311 33.8
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 7.2e-15 85.5 267 34.1
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 7.2e-15 85.5 269 32.0
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 9.4e-15 85.1 266 35.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.2e-14 84.7 286 32.9
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.6e-14 84.3 109 50.5
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.6e-14 84.3 239 34.7
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.6e-14 84.3 82 61.0
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.1e-14 84.0 174 42.5
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 2.1e-14 84.0 282 36.2
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.7e-14 83.6 272 30.5
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 1.0e-13 81.6 82 58.5
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.4e-13 81.3 77 64.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.8e-13 80.9 212 37.7
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.8e-13 80.9 174 39.1
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 2.3e-13 80.5 125 45.6
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 3.0e-13 80.1 89 56.2
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 3.9e-13 79.7 165 41.2
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 5.1e-13 79.3 131 42.7
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 5.1e-13 79.3 77 62.3
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 8.8e-13 78.6 172 39.0
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 8.8e-13 78.6 273 31.1
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 8.8e-13 78.6 166 42.2
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 8.8e-13 78.6 166 42.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 8.8e-13 78.6 268 30.6
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 8.8e-13 78.6 204 36.8
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.5e-12 77.8 318 30.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.0e-12 77.4 133 46.6
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.5e-12 77.0 159 41.5
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 4.3e-12 76.3 73 60.3
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 4.3e-12 76.3 73 60.3
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 5.7e-12 75.9 73 63.0
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.7e-11 73.2 275 32.7
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 3.7e-11 73.2 223 35.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 6.3e-11 72.4 196 35.7
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 6.3e-11 72.4 237 31.6
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 6.3e-11 72.4 259 33.2
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 8.2e-11 72.0 165 38.8
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 8.2e-11 72.0 69 60.9
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.4e-10 71.2 62 64.5
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.8e-10 70.9 162 38.3
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.4e-10 70.5 212 35.4
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 2.4e-10 70.5 62 62.9
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 4.1e-10 69.7 243 34.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 6.9e-10 68.9 199 34.2
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.7e-08 64.3 77 55.8
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 2.9e-08 63.5 63 54.0
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 2.9e-08 63.5 263 28.9
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 8.5e-08 62.0 63 52.4
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.1e-07 61.6 75 46.7
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 3.2e-07 60.1 226 32.7
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.2e-07 58.9 79 44.3
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 6.1e-06 55.8 50 60.0


User provided reference genes

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