Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.7e-55 218.4 108 100.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.7e-55 218.4 108 100.0
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.4e-48 196.1 108 88.9
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 5.5e-40 167.5 87 94.3
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.1e-39 165.6 108 72.2
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.7e-39 165.2 108 74.1
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 73.1
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 74.1
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.8e-38 162.5 108 71.3
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.5e-37 159.5 108 70.4
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 7.4e-37 157.1 108 72.2
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 67.6
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 70.4
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 64.8
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 70.4
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 69.4
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 70.4
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 70.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 70.4
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 70.4
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 65.7
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 70.4
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 68.5
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 68.5
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 68.5
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 65.7
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 65.7
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 68.5
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 71.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 65.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 63.9
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 65.7
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 68.5
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 64.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 66.7
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 63.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 64.8
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 65.7
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 63.9
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 65.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 4.5e-34 147.9 109 62.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 5.9e-34 147.5 107 62.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 5.9e-34 147.5 109 68.8
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 66.7
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 63.0
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 66.7
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 63.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 63.0
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 65.7
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 62.0
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 63.0
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 61.1
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 62.0
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 62.0
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 65.7
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 65.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 62.0
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 62.0
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 61.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.1e-32 143.3 109 66.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.0
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.9e-32 142.5 109 66.1
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 63.0
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 63.0
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.2e-32 141.7 109 63.3
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 4.2e-32 141.4 109 65.1
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 63.9
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 64.8
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 60.2
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 7.2e-32 140.6 108 65.7
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 7.2e-32 140.6 105 67.6
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 62.0
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.0
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 62.0
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 62.0
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.6e-31 137.9 109 64.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 4.6e-31 137.9 111 62.2
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 61.1
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 61.1
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 60.2
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.8e-30 136.0 109 65.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.8e-30 136.0 107 62.6
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 59.3
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 8.8e-30 133.7 108 57.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.1e-29 133.3 109 60.6
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 59.3
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 59.3
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 58.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 59.3
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 58.3
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 58.3
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 59.3
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 59.3
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 59.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 7.4e-29 130.6 108 59.3
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 61.1
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 59.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 61.1
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 61.1
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 59.3
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 3.7e-28 128.3 99 60.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 4.8e-28 127.9 107 57.0
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.1e-27 124.8 96 61.5
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 57.4
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 60.2
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 57.4
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 56.5
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 57.4
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.5e-26 122.9 103 59.2
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 56.5
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 57.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 57.4
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 4.5e-26 121.3 92 65.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 55.6
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.3e-25 119.8 89 65.2
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 54.6
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 3.8e-25 118.2 88 61.4
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 50.0
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.4e-24 116.3 86 67.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 1.9e-24 115.9 86 66.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 1.9e-24 115.9 100 60.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.2e-24 115.2 86 66.3
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.2e-24 114.8 87 67.8
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.2e-23 113.2 88 62.5
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.7e-23 112.1 87 66.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 3.6e-23 111.7 86 64.0
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 7.9e-23 110.5 87 57.5
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.0e-22 110.2 86 61.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.0e-22 110.2 86 61.6
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.0e-22 110.2 86 64.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.0e-22 110.2 86 59.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-22 109.8 84 64.3
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.8e-22 109.4 108 55.6
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.9e-22 108.2 84 63.1
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 3.9e-22 108.2 108 50.0
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 2.0e-21 105.9 72 65.3
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 3.3e-21 105.1 108 49.1
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.3e-20 103.2 89 59.6
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.7e-20 101.7 108 49.1
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.1e-19 98.2 86 55.8
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 4.1e-19 98.2 83 67.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.0e-18 95.9 88 53.4
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 4.5e-18 94.7 87 56.3
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.2e-17 92.4 106 40.6
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.9e-17 92.0 90 54.4
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 2.5e-16 89.0 86 53.5
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 5.5e-16 87.8 108 43.5
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 7.2e-16 87.4 109 42.2
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.6e-15 86.3 58 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.7e-15 85.5 109 41.3
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 5.2e-14 81.3 66 62.1
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 8.8e-14 80.5 111 45.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 7.4e-13 77.4 86 48.8
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 9.7e-13 77.0 64 59.4
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 5.3e-11 71.2 111 39.6
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.2e-10 70.1 74 50.0
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 2.6e-10 68.9 109 40.4
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 2.5e-08 62.4 41 68.3
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 8.8e-06 53.9 72 43.1
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 8.8e-06 53.9 72 43.1


User provided reference genes

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