Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.5e-135 484.6 242 100.0
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 4.1e-128 461.5 239 95.8
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.3e-97 360.1 285 68.4
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 3.6e-84 315.5 225 69.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.8e-83 313.2 216 74.1
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.4e-83 312.8 225 69.3
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.2e-82 310.5 210 72.4
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.6e-82 309.3 210 72.4
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 5.8e-82 308.1 218 69.7
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.7e-81 306.6 210 70.0
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.2e-81 306.2 243 65.0
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 4.9e-81 305.1 215 71.6
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.1e-80 303.9 240 65.4
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.9e-80 303.1 210 70.0
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.9e-80 303.1 209 69.9
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.9e-80 303.1 232 65.9
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.4e-80 301.6 209 69.4
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.4e-80 301.6 236 64.8
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.7e-79 299.3 213 69.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.3e-78 297.0 213 65.7
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.7e-78 296.6 225 65.8
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.3e-78 296.2 223 65.9
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.0e-78 295.8 223 66.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 3.9e-78 295.4 201 71.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.9e-78 295.4 225 65.8
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 8.7e-78 294.3 225 65.3
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 8.7e-78 294.3 224 65.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.5e-77 293.5 220 67.7
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.5e-77 293.5 217 65.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.9e-77 293.1 218 68.8
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.5e-77 292.7 213 68.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 4.3e-77 292.0 228 63.2
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.3e-76 290.4 232 66.8
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.3e-76 290.4 211 66.8
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.4e-75 287.0 213 65.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 2.4e-75 286.2 206 69.4
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 6.9e-75 284.6 218 65.6
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 6.9e-75 284.6 226 63.3
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 9.0e-75 284.3 206 67.0
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.2e-74 283.9 224 63.8
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.0e-74 283.1 224 63.8
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 2.0e-74 283.1 214 68.2
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.6e-74 282.7 213 66.2
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 2.6e-74 282.7 222 63.5
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.5e-74 282.0 224 62.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 9.9e-74 280.8 227 63.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.3e-73 280.4 225 62.2
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 1.7e-73 280.0 210 64.3
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.7e-73 280.0 206 67.5
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 2.2e-73 279.6 213 65.7
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 2.2e-73 279.6 213 65.7
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 3.8e-73 278.9 220 62.7
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 3.8e-73 278.9 225 60.9
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.4e-72 276.9 206 66.5
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.4e-72 276.9 199 66.3
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.9e-72 276.6 231 61.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 3.2e-72 275.8 213 64.8
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 4.2e-72 275.4 213 63.8
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.2e-72 275.4 217 64.1
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 5.4e-72 275.0 213 63.8
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.6e-71 273.5 213 63.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.6e-71 273.5 209 66.0
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.5e-71 272.3 212 65.6
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 3.5e-71 272.3 213 64.3
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.5e-71 272.3 199 68.3
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 7.9e-71 271.2 225 62.7
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.0e-70 270.8 218 62.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.0e-70 270.8 243 57.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.0e-70 270.8 208 63.9
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.3e-70 270.4 210 65.7
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.8e-70 270.0 193 67.9
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.8e-70 270.0 206 65.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 3.0e-70 269.2 210 64.3
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.0e-70 269.2 207 65.2
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 3.9e-70 268.9 235 59.1
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 3.3e-69 265.8 217 63.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 7.4e-69 264.6 221 63.8
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 7.4e-69 264.6 198 64.6
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.1e-68 263.1 214 62.1
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.1e-68 263.1 214 62.1
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 6.2e-68 261.5 205 61.0
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 6.2e-68 261.5 205 61.0
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 6.2e-68 261.5 232 58.2
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.1e-67 260.8 190 67.9
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.8e-67 260.0 194 64.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 3.1e-67 259.2 219 67.1
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.2e-66 257.3 201 64.2
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.4e-66 255.8 197 64.5
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.9e-65 252.7 200 64.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.8e-65 252.3 192 64.1
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 6.5e-65 251.5 213 62.0
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 3.2e-64 249.2 212 57.1
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.2e-63 247.3 202 60.9
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.1e-61 240.7 159 74.8
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.1e-61 240.7 227 54.6
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 5.7e-61 238.4 227 54.2
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.3e-60 237.3 219 58.0
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 6.2e-60 235.0 185 62.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.4e-59 233.8 206 56.3
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 5.3e-59 231.9 226 55.3
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 1.3e-57 227.3 187 60.4
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.3e-57 227.3 168 66.1
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.7e-57 226.9 194 58.2
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.9e-56 223.4 213 54.9
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.5e-55 219.2 201 56.2
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 6.7e-54 214.9 215 55.3
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.5e-53 213.0 206 55.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 9.7e-53 211.1 117 88.9
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.6e-52 210.3 217 52.5
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.1e-51 207.6 216 53.7
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 9.0e-51 204.5 145 66.2
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 7.7e-50 201.4 136 72.1
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-49 200.7 203 51.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.7e-49 200.3 130 73.1
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 3.8e-49 199.1 134 70.1
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 8.5e-49 198.0 145 65.5
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 2.5e-45 186.4 201 47.8
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 9.7e-45 184.5 143 67.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 8.2e-44 181.4 204 47.1
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 5.3e-43 178.7 137 60.6
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.6e-42 176.4 138 60.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.6e-42 176.4 202 46.5
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 5.0e-41 172.2 155 58.7
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.6e-39 166.0 203 46.3
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 4.7e-39 165.6 136 61.8
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.0e-37 160.2 192 47.4
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.1e-35 152.5 124 56.5
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 9.4e-32 141.4 135 55.6
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.0e-30 136.3 111 61.3
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 6.7e-30 135.2 168 46.4
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 5.7e-29 132.1 84 79.8
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-25 120.9 173 38.7
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 6.1e-23 112.1 80 65.0
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.8e-22 110.5 181 37.6
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 7.2e-16 88.6 258 26.0
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 2.1e-15 87.0 83 56.6
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.0e-14 83.2 103 44.7
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.8e-14 82.0 58 67.2
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 7.5e-13 78.6 62 62.9
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 7.5e-13 78.6 62 62.9
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 6.3e-12 75.5 58 58.6
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.4e-11 74.3 196 29.6
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 5.4e-11 72.4 51 66.7
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 2.7e-10 70.1 161 33.5
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.0e-09 68.2 42 73.8
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.7e-09 67.4 181 28.2
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 5.6e-08 62.4 137 29.9
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 5.6e-08 62.4 144 31.9
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 7.3e-08 62.0 179 27.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.2e-07 61.2 179 27.9
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.2e-07 61.2 114 32.5
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.2e-07 61.2 168 29.8
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.1e-07 60.5 179 27.9
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 2.8e-07 60.1 179 28.5
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 3.6e-07 59.7 177 27.7
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.6e-07 59.7 186 25.3
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 4.7e-07 59.3 179 26.8
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 4.7e-07 59.3 162 27.8
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 4.7e-07 59.3 113 31.9
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 4.7e-07 59.3 162 28.4
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 6.1e-07 58.9 182 29.1
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 8.0e-07 58.5 111 32.4
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 8.0e-07 58.5 142 31.7
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 1.4e-06 57.8 184 26.1
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.4e-06 57.8 110 34.5
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.8e-06 57.4 188 25.0
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.8e-06 57.4 110 34.5
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 5.2e-06 55.8 113 31.0
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 5.2e-06 55.8 113 31.0
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 5.2e-06 55.8 113 31.0
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 5.2e-06 55.8 183 30.6
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 5.2e-06 55.8 142 31.0
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 6.8e-06 55.5 108 32.4
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 6.8e-06 55.5 145 31.0
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 6.8e-06 55.5 109 31.2
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 6.8e-06 55.5 109 31.2
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 8.9e-06 55.1 177 27.7


User provided reference genes

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