Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 6.8e-27 123.2 62 100.0
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.8e-20 101.3 62 77.4
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 2.8e-20 101.3 62 77.4
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 9.8e-18 92.8 62 69.4
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 2.2e-17 91.7 47 93.6
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 2.9e-17 91.3 62 69.4
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 8.3e-17 89.7 62 69.4
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.1e-16 89.4 62 71.0
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.9e-16 88.6 62 67.7
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.4e-16 88.2 62 66.1
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.4e-16 88.2 62 66.1
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 5.4e-16 87.0 62 67.7
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 9.2e-16 86.3 61 62.3
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.2e-15 85.9 60 68.3
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.6e-15 85.5 59 67.8
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.6e-15 84.0 60 65.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.3e-14 81.6 61 62.3
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 2.3e-14 81.6 62 64.5
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.0e-14 81.3 58 67.2
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.9e-14 80.9 59 67.8
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 6.6e-14 80.1 59 66.1
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 8.6e-14 79.7 59 62.7
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 8.6e-14 79.7 59 62.7
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-13 78.2 59 61.0
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-13 78.2 59 61.0
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.5e-13 78.2 59 61.0
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.3e-13 77.8 61 55.7
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 9.5e-13 76.3 61 57.4
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.6e-12 75.5 57 59.6
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.6e-12 74.3 61 55.7
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.6e-12 74.3 62 58.1
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 4.7e-12 73.9 57 57.9
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.1e-12 73.2 57 57.9
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.1e-11 72.8 57 57.9
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.0e-11 70.9 57 56.1
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.2e-11 70.5 61 52.5
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 6.8e-11 70.1 62 51.6
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.5e-10 68.9 57 57.9
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.5e-10 68.9 57 56.1
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.0e-10 68.6 57 57.9
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.0e-10 68.6 57 57.9
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 2.6e-10 68.2 57 56.1
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.4e-10 67.8 57 54.4
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 4.4e-10 67.4 57 54.4
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 5.8e-10 67.0 57 54.4
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 7.5e-10 66.6 57 56.1
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 7.5e-10 66.6 57 57.9
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 9.8e-10 66.2 57 54.4
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 57 56.1
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.3e-09 65.9 57 47.4
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.3e-09 65.9 58 55.2
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.2e-09 65.1 53 54.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 2.2e-09 65.1 57 49.1
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.2e-09 65.1 57 50.9
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 2.9e-09 64.7 55 52.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 50.9
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 50.9
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 50.9
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 50.9
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 50.9
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 50.9
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 3.7e-09 64.3 56 50.0
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.7e-09 64.3 57 47.4
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 4.9e-09 63.9 57 50.9
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.9e-09 63.9 57 50.9
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 4.9e-09 63.9 56 51.8
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 4.9e-09 63.9 59 49.2
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 6.4e-09 63.5 57 50.9
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 6.4e-09 63.5 57 50.9
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 6.4e-09 63.5 53 54.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 50.9
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 49.1
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 52.6
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 45.6
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 45.6
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 45.6
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 52.6
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.4e-08 62.4 47 59.6
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 2.4e-08 61.6 53 54.7
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.4e-08 61.6 57 49.1
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 2.4e-08 61.6 61 42.6
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 4.1e-08 60.8 57 52.6
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 5.4e-08 60.5 57 49.1
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 5.4e-08 60.5 57 49.1
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 7.1e-08 60.1 57 45.6
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 7.1e-08 60.1 57 47.4
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 7.1e-08 60.1 53 50.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 9.2e-08 59.7 57 50.9
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 9.2e-08 59.7 62 43.5
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.7e-07 58.2 54 50.0
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 2.7e-07 58.2 52 51.9
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 3.5e-07 57.8 57 50.9
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 3.5e-07 57.8 55 49.1
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 4.6e-07 57.4 59 47.5
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 4.6e-07 57.4 57 47.4
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 7.8e-07 56.6 57 42.1
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 7.8e-07 56.6 57 42.1
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 7.8e-07 56.6 57 42.1
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 7.8e-07 56.6 57 42.1
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 7.8e-07 56.6 50 52.0
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.0e-06 56.2 57 45.6
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.3e-06 55.8 57 45.6
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 2.3e-06 55.1 57 42.1
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 2.3e-06 55.1 57 43.9
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 5.1e-06 53.9 57 45.6


User provided reference genes

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