Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.9e-85 318.2 166 100.0
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.3e-64 250.0 162 87.0
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.6e-59 231.9 160 80.6
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 3.1e-58 228.8 164 79.3
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.1e-42 177.2 168 62.5
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.0e-37 160.6 163 57.1
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 5.6e-36 154.8 162 56.8
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 4.0e-34 148.7 162 54.9
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 1.2e-33 147.1 169 52.1
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.0e-33 146.4 164 56.7
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.0e-32 144.1 167 53.3
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.3e-32 143.7 167 50.3
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.2e-32 142.9 172 55.8
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 6.5e-32 141.4 157 54.1
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.1e-31 140.6 159 57.9
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.9e-31 139.8 164 54.9
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.5e-31 139.4 163 55.8
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.2e-31 138.7 184 49.5
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 4.3e-28 128.6 178 50.0
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 5.7e-28 128.3 171 46.8
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 9.6e-28 127.5 165 53.3
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.6e-27 126.7 160 53.8
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.4e-26 123.6 160 49.4
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 2.4e-26 122.9 166 49.4
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 9.0e-26 120.9 128 58.6
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-25 120.6 168 51.2
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.2e-25 120.6 161 50.3
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 2.6e-25 119.4 142 54.2
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 5.8e-25 118.2 170 48.2
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 5.8e-25 118.2 130 56.9
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 5.0e-24 115.2 168 46.4
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 4.2e-23 112.1 168 45.2
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 5.5e-23 111.7 166 49.4
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 9.3e-23 110.9 153 51.0
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.2e-22 110.5 164 47.6
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 7.9e-22 107.8 164 48.8
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.3e-21 107.1 161 48.4
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 3.0e-21 105.9 153 50.3
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 3.9e-21 105.5 163 47.2
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 5.1e-21 105.1 163 48.5
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 5.1e-21 105.1 165 47.9
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 8.7e-21 104.4 166 46.4
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 1.1e-20 104.0 156 50.6
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 1.5e-20 103.6 170 48.8
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.5e-20 103.6 166 46.4
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.5e-20 103.6 166 45.2
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.5e-20 102.8 140 53.6
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.5e-20 102.8 140 53.6
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 3.3e-20 102.4 146 50.7
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.3e-20 102.4 146 50.7
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 4.3e-20 102.1 177 45.2
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 4.3e-20 102.1 128 50.0
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 9.7e-20 100.9 170 44.7
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 1.3e-19 100.5 126 48.4
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 1.6e-19 100.1 157 47.8
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 4.8e-19 98.6 157 48.4
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 4.1e-18 95.5 141 45.4
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 5.3e-18 95.1 128 52.3
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 2.6e-17 92.8 161 47.2
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 1.3e-16 90.5 159 47.2
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.2e-16 89.7 171 39.8
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 3.8e-16 89.0 157 44.6
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 6.5e-16 88.2 159 42.8
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 8.5e-16 87.8 143 46.2
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 1.9e-15 86.7 170 41.8
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 2.5e-15 86.3 127 44.1
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 3.2e-15 85.9 126 49.2
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 5.5e-15 85.1 121 48.8
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.5e-15 85.1 171 38.6
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 7.2e-15 84.7 149 47.7
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 7.2e-15 84.7 108 47.2
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 3.6e-14 82.4 163 41.1
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.0e-13 80.9 128 48.4
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.0e-13 80.9 132 49.2
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 1.1e-12 77.4 118 48.3
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 3.3e-12 75.9 114 47.4
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 5.7e-12 75.1 169 42.6
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 5.7e-12 75.1 113 46.0
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 7.4e-12 74.7 126 46.8
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 7.4e-12 74.7 137 47.4
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 3.7e-11 72.4 107 45.8
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 4.8e-11 72.0 139 45.3
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 8.2e-11 71.2 102 47.1
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 8.2e-11 71.2 113 44.2
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 8.2e-11 71.2 113 44.2
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 8.2e-11 71.2 165 40.6
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 8.2e-11 71.2 137 40.1
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 1.8e-10 70.1 132 43.9
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 2.4e-10 69.7 163 35.6
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 3.1e-10 69.3 150 37.3
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 4.1e-10 68.9 185 33.0
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 5.3e-10 68.6 79 53.2
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 9.1e-10 67.8 161 37.3
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.2e-09 67.4 172 36.0
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 1.2e-09 67.4 88 52.3
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 2.0e-09 66.6 114 42.1
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.0e-09 66.6 107 43.0
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.6e-09 66.2 102 42.2
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 2.6e-09 66.2 88 52.3
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 4.5e-09 65.5 88 51.1
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 5.9e-09 65.1 133 43.6
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 7.7e-09 64.7 88 48.9
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 7.7e-09 64.7 139 42.4
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 7.7e-09 64.7 86 48.8
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 7.7e-09 64.7 86 48.8
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 1.3e-08 63.9 131 42.7
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 1.3e-08 63.9 133 43.6
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 1.3e-08 63.9 132 43.9
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 1.7e-08 63.5 141 40.4
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 2.2e-08 63.2 86 47.7
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 2.9e-08 62.8 86 47.7
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 2.9e-08 62.8 86 47.7
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 2.9e-08 62.8 131 44.3
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 2.9e-08 62.8 90 46.7
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 3.8e-08 62.4 90 48.9
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.0e-08 62.0 106 50.9
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.1e-07 60.8 108 47.2
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.1e-07 60.8 92 46.7
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 1.9e-07 60.1 96 49.0
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 1.9e-07 60.1 84 52.4
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 1.9e-07 60.1 121 41.3
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 2.5e-07 59.7 121 41.3
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 3.2e-07 59.3 141 39.7
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 4.2e-07 58.9 93 41.9
Sabra04G0135800 Salix brachista HOM05D065446 ORTHO05D050541 5.5e-07 58.5 114 40.4
Aa31LG10G7560 Aethionema arabicum HOM05D006872 ORTHO05D006261 7.2e-07 58.2 104 44.2
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 7.2e-07 58.2 141 38.3
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 9.4e-07 57.8 66 54.5
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 9.4e-07 57.8 86 44.2
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.1e-06 56.6 106 43.4
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 2.7e-06 56.2 60 51.7
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 3.6e-06 55.8 82 46.3
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 3.6e-06 55.8 77 44.2
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 4.7e-06 55.5 106 35.8
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.1e-06 55.1 105 41.9
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.1e-06 55.1 105 41.9
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 7.9e-06 54.7 60 56.7


User provided reference genes

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