Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.2e-118 429.9 221 100.0
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 3.9e-93 345.1 222 84.2
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.8e-85 319.7 239 75.3
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 8.2e-67 257.7 237 65.0
Sabra16G0073900 Salix brachista HOM05D007532 ORTHO05D009483 3.5e-65 252.3 237 64.1
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 3.7e-35 152.5 200 51.5
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 5.9e-33 145.2 250 43.6
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 1.3e-32 144.1 250 42.8
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 2.3e-32 143.3 225 45.3
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 6.2e-30 135.2 200 47.0
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 2.3e-29 133.3 201 45.3
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 3.1e-29 132.9 216 41.7
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 4.9e-27 125.6 207 44.0
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 1.1e-26 124.4 207 43.5
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 1.9e-26 123.6 200 45.5
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.9e-26 123.6 206 42.7
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 2.0e-25 120.2 192 44.8
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 6.0e-25 118.6 211 44.5
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 5.0e-24 115.5 205 41.5
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 7.3e-23 111.7 205 41.5
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 1.2e-22 110.9 213 39.0
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 4.7e-22 109.0 204 43.1
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 8.1e-22 108.2 241 40.2
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 2.0e-20 103.6 208 40.9
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 2.6e-20 103.2 204 44.1
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 2.6e-20 103.2 214 38.3
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 2.6e-20 103.2 207 39.6
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 3.4e-20 102.8 202 41.1
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 4.4e-20 102.4 220 38.6
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 5.8e-20 102.1 223 40.4
Actinidia04004 Actinidia chinensis HOM05D007532 ORTHO05D009483 7.5e-20 101.7 182 41.8
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.3e-19 100.9 208 41.3
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 1.7e-19 100.5 212 39.2
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 6.4e-19 98.6 203 40.9
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 1.9e-18 97.1 215 37.2
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 4.1e-18 95.9 202 39.6
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 1.6e-17 94.0 201 37.3
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 3.5e-17 92.8 233 36.5
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 1.1e-15 87.8 230 34.8
Gohir.A04G060800 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.9e-15 87.0 222 36.9
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 2.5e-15 86.7 204 38.7
Carub.0005s1887 Capsella rubella HOM05D007532 ORTHO05D009483 3.3e-15 86.3 222 34.2
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 3.3e-15 86.3 206 37.9
Migut.L01834 Erythranthe guttata HOM05D007532 ORTHO05D009483 7.3e-15 85.1 216 35.6
Rhsim03G0066200 Rhododendron simsii HOM05D007532 ORTHO05D009483 1.6e-14 84.0 189 39.7
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 2.1e-14 83.6 206 37.9
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 2.8e-14 83.2 219 36.5
FAN05G0427 Fragaria x ananassa HOM05D007532 ORTHO05D009483 2.8e-14 83.2 204 36.8
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 4.7e-14 82.4 206 38.3
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 4.7e-14 82.4 206 38.3
AT3G52480 Arabidopsis thaliana HOM05D007532 ORTHO05D009483 6.2e-14 82.0 216 39.4
CARHR162250 Cardamine hirsuta HOM05D007532 ORTHO05D009483 8.1e-14 81.6 236 32.6
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 1.1e-13 81.3 219 38.8
Lsat_1_v5_gn_1_57140 Lactuca sativa HOM05D007532 ORTHO05D009483 1.8e-13 80.5 202 36.6
BcaB01g00362 Brassica carinata HOM05D007532 ORTHO05D009483 3.1e-13 79.7 212 37.7
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 5.2e-13 79.0 205 37.6
Lalb_Chr02g0154541 Lupinus albus HOM05D007532 ORTHO05D009483 5.2e-13 79.0 210 34.3
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 6.8e-13 78.6 213 37.1
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 6.8e-13 78.6 213 37.1
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 1.2e-12 77.8 216 38.0
Thhalv10010711m.g Eutrema salsugineum HOM05D007532 ORTHO05D009483 2.0e-12 77.0 212 36.8
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 5.8e-12 75.5 207 35.3
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 5.8e-12 75.5 198 32.8
Sc20g0006700 Simmondsia chinensis HOM05D007532 ORTHO05D009483 5.8e-12 75.5 191 36.1
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 7.6e-12 75.1 207 35.3
ClCG09G019970 Citrullus lanatus HOM05D002150 ORTHO05D002191 9.9e-12 74.7 214 30.4
MELO3C021655.2 Cucumis melo HOM05D002150 ORTHO05D002191 9.9e-12 74.7 214 30.4
CsaV3_5G026480 Cucumis sativus L. HOM05D002150 ORTHO05D002191 9.9e-12 74.7 214 30.4
DCAR_027636 Daucus carota HOM05D002150 ORTHO05D002191 2.9e-11 73.2 232 32.3
Lj5g0000288 Lotus japonicus HOM05D007532 ORTHO05D009483 2.9e-11 73.2 203 34.0
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 1.1e-10 71.2 206 34.5
Cfa001494 Carpinus fangiana HOM05D002150 ORTHO05D002191 1.4e-10 70.9 218 28.9
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 1.4e-10 70.9 223 30.9
Haze_17047 Corylus avellana HOM05D002150 ORTHO05D002191 4.1e-10 69.3 219 28.3
Aqoxy4G02951 Aquilegia oxysepala HOM05D002150 ORTHO05D002191 5.4e-10 68.9 218 29.4
Sed0020416 Sechium edule HOM05D002150 ORTHO05D002191 5.4e-10 68.9 214 29.9
Lsat_1_v5_gn_2_119741 Lactuca sativa HOM05D002150 ORTHO05D002191 7.1e-10 68.6 221 32.1
QL08p059179 Quercus lobata HOM05D002150 ORTHO05D002191 7.1e-10 68.6 214 30.8
HanXRQChr14g0458181 Helianthus annuus HOM05D002150 ORTHO05D002191 1.6e-09 67.4 210 31.0
Ca_11714_v3 Cicer arietinum L. HOM05D007532 ORTHO05D009483 2.7e-09 66.6 205 34.6
TAR369G0649 Trochodendron aralioides HOM05D002150 ORTHO05D002191 2.7e-09 66.6 210 29.5
ATR0772G158 Amborella trichopoda HOM05D002150 ORTHO05D002191 3.5e-09 66.2 239 31.0
Ciclev10032119m.g Citrus clementina HOM05D002150 ORTHO05D002191 4.6e-09 65.9 219 26.9
Hma1.2p1_1263F.1_g271270 Hydrangea macrophylla HOM05D002150 ORTHO05D002191 4.6e-09 65.9 214 29.4
Nn5g26936 Nelumbo nucifera HOM05D002150 ORTHO05D002191 4.6e-09 65.9 217 28.6
Lj1C1049T4 Lonicera japonica HOM05D007532 ORTHO05D009483 6.0e-09 65.5 158 39.2
Rhsim09G0165300 Rhododendron simsii HOM05D002150 ORTHO05D002191 6.0e-09 65.5 211 29.9
VMungo1383G0536 Vigna mungo HOM05D002150 ORTHO05D002191 6.0e-09 65.5 220 28.6
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 7.8e-09 65.1 203 31.5
Medtr1g057220 Medicago truncatula HOM05D007532 ORTHO05D009483 7.8e-09 65.1 205 33.2
Aqoxy1G00693 Aquilegia oxysepala HOM05D007532 ORTHO05D009483 1.0e-08 64.7 188 35.1
Aa31LG10G7530 Aethionema arabicum HOM05D007532 ORTHO05D009483 1.3e-08 64.3 202 33.2
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 1.3e-08 64.3 198 32.8
FvH4_7g22100 Fragaria vesca HOM05D002150 ORTHO05D002191 1.7e-08 63.9 240 26.7
CSS0006598 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 2.3e-08 63.5 213 30.0
CSS0034701 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 2.3e-08 63.5 213 30.0
Duzib128G1760 Durio zibethinus HOM05D002150 ORTHO05D002191 2.3e-08 63.5 209 29.7
FAN01G1666 Fragaria x ananassa HOM05D002150 ORTHO05D002191 2.3e-08 63.5 240 26.2
FAN01G1088 Fragaria x ananassa HOM05D002150 ORTHO05D002191 3.0e-08 63.2 240 26.7
FAN06G3415 Fragaria x ananassa HOM05D002150 ORTHO05D002191 3.0e-08 63.2 240 26.7
Phvul.008G012900 Phaseolus vulgaris HOM05D002150 ORTHO05D002191 3.0e-08 63.2 219 27.4
TWI15G1205 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 5.1e-08 62.4 204 30.4
Prupe.2G233200 Prunus persica HOM05D002150 ORTHO05D002191 6.6e-08 62.0 215 28.8
Thecc.09G324000 Theobroma cacao HOM05D002150 ORTHO05D002191 6.6e-08 62.0 216 29.2
Lj1g0013000 Lotus japonicus HOM05D002150 ORTHO05D002191 8.6e-08 61.6 216 28.2
TAR623G1329 Trochodendron aralioides HOM05D002150 ORTHO05D002191 8.6e-08 61.6 210 28.6
Eucgr.J02060 Eucalyptus grandis HOM05D002150 ORTHO05D002191 1.1e-07 61.2 220 29.1
ATR0559G086 Amborella trichopoda HOM05D002150 ORTHO05D002191 1.5e-07 60.8 216 26.9
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 1.5e-07 60.8 203 32.0
FAN10G3914 Fragaria x ananassa HOM05D002150 ORTHO05D002191 1.5e-07 60.8 224 28.1
Manes.07G114700 Manihot esculenta HOM05D002150 ORTHO05D002191 1.5e-07 60.8 212 28.3
CiPaw.14G070000 Carya illinoinensis HOM05D002150 ORTHO05D002191 1.9e-07 60.5 210 29.5
Glyma.18G289200 Glycine max HOM05D002150 ORTHO05D002191 1.9e-07 60.5 219 26.9
TWI38G0694 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 1.9e-07 60.5 218 27.1
PGR142G1450 Punica granatum HOM05D002150 ORTHO05D002191 2.5e-07 60.1 216 30.1
COL.COLO4_14995 Corchorus olitorius HOM05D002150 ORTHO05D002191 3.3e-07 59.7 229 28.8
Atru.chr12.464 Acer truncatum HOM05D002150 ORTHO05D002191 4.3e-07 59.3 242 26.4
Atru.chr12.486 Acer truncatum HOM05D002150 ORTHO05D002191 4.3e-07 59.3 242 26.4
Actinidia02955 Actinidia chinensis HOM05D002150 ORTHO05D002191 4.3e-07 59.3 210 29.5
CiPaw.02G183100 Carya illinoinensis HOM05D002150 ORTHO05D002191 5.6e-07 58.9 218 27.1
Ah.05g174060 Amaranthus hybridus HOM05D002150 ORTHO05D002191 1.2e-06 57.8 207 29.5
MELO3C013692.2 Cucumis melo HOM05D002150 ORTHO05D002191 1.2e-06 57.8 221 29.9
Dinv31446 Davidia involucrata HOM05D002150 ORTHO05D002191 1.2e-06 57.8 216 29.2
Duzib114G0657 Durio zibethinus HOM05D002150 ORTHO05D002191 1.2e-06 57.8 208 28.8
Glyma.02G093100 Glycine max HOM05D002150 ORTHO05D002191 1.2e-06 57.8 221 28.1
Medtr7g024480 Medicago truncatula HOM05D002150 ORTHO05D002191 1.2e-06 57.8 222 26.6
Sp5g09820 Schrenkiella parvula HOM05D007532 ORTHO05D009483 1.2e-06 57.8 223 32.7
CANSAT54G0127 Cannabis sativa HOM05D002150 ORTHO05D002191 1.6e-06 57.4 208 27.4
FAN06G2166 Fragaria x ananassa HOM05D002150 ORTHO05D002191 1.6e-06 57.4 240 25.4
Potri.010G206100 Populus trichocarpa HOM05D002150 ORTHO05D002191 1.6e-06 57.4 212 28.8
CSS0001235 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 2.1e-06 57.0 209 30.6
Haze_24076 Corylus avellana HOM05D002150 ORTHO05D002191 2.1e-06 57.0 202 29.2
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 2.1e-06 57.0 187 28.9
Duzib150G1281 Durio zibethinus HOM05D002150 ORTHO05D002191 2.8e-06 56.6 208 29.3
HanXRQChr08g0220401 Helianthus annuus HOM05D002150 ORTHO05D002191 2.8e-06 56.6 213 29.1
MD14G1037100 Malus domestica HOM05D007532 ORTHO05D009483 2.8e-06 56.6 203 33.0
RcHm_v2.0_Chr1g0366491 Rosa chinensis HOM05D002150 ORTHO05D002191 2.8e-06 56.6 219 26.5
AUR62006278 Chenopodium quinoa HOM05D007532 ORTHO05D009483 3.6e-06 56.2 208 31.2
AUR62037048 Chenopodium quinoa HOM05D007532 ORTHO05D009483 3.6e-06 56.2 212 30.2
FAN03G0145 Fragaria x ananassa HOM05D002150 ORTHO05D002191 3.6e-06 56.2 239 26.8
Lj1P935T28 Lonicera japonica HOM05D002150 ORTHO05D002191 3.6e-06 56.2 193 30.6
Prupe.6G080000 Prunus persica HOM05D002150 ORTHO05D002191 3.6e-06 56.2 214 28.0
TPR.G31864 Trifolium pratense HOM05D007532 ORTHO05D009483 3.6e-06 56.2 205 30.7
Nn2g10398 Nelumbo nucifera HOM05D002150 ORTHO05D002191 4.7e-06 55.8 217 26.7
QL01p032435 Quercus lobata HOM05D002150 ORTHO05D002191 6.2e-06 55.5 213 29.1
Sed0006133 Sechium edule HOM05D002150 ORTHO05D002191 6.2e-06 55.5 213 29.1
DCAR_016921 Daucus carota HOM05D007532 ORTHO05D009483 8.1e-06 55.1 192 30.7
ECA238G3924 Erigeron canadensis HOM05D002150 ORTHO05D002191 8.1e-06 55.1 151 33.1
Eucgr.A02598 Eucalyptus grandis HOM05D007532 ORTHO05D009483 8.1e-06 55.1 223 30.5
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 8.1e-06 55.1 198 30.8


User provided reference genes

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