Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.8e-145 519.2 261 100.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 8.9e-145 516.9 261 99.2
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 2.0e-144 515.8 261 99.2
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 2.0e-144 515.8 261 99.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.0e-140 501.9 261 95.4
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 8.6e-140 500.4 261 95.0
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.3e-139 498.4 285 90.2
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 7.3e-139 497.3 261 94.6
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 94.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 6.2e-138 494.2 261 94.6
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.1e-137 493.4 261 93.9
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.3e-137 492.3 261 94.3
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 4.0e-137 491.5 261 92.7
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 93.5
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 93.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.3
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 93.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 92.7
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 92.7
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.7
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 93.5
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 93.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 92.0
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.3
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 93.1
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 93.1
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.7
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.0
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 93.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.3
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.3
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.3
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.3
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 91.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.7
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 93.1
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.3
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 90.8
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 92.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.4e-134 483.0 260 91.9
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.0
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.6
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 91.2
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 92.0
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.4e-134 482.3 260 92.3
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 90.8
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 91.2
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 5.4e-134 481.1 260 91.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 91.6
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 91.6
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.8
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.2e-133 479.9 260 92.3
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.7e-133 478.8 258 92.2
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.8
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.8
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 4.6e-133 478.0 260 90.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.8
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.8
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 91.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 92.3
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.4
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.8
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.4
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.4
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.4
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 92.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 89.7
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.3e-132 475.7 265 89.4
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.8
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 90.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 90.0
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 6.6e-132 474.2 264 90.9
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.4
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.8
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.7
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.1e-131 473.4 256 91.4
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.5
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 90.4
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 90.4
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.9
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 90.8
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 89.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.3e-131 471.9 260 89.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.3e-131 471.5 260 89.6
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.3e-131 471.5 260 89.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 4.3e-131 471.5 269 88.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 89.3
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 89.3
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 89.3
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.9
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 89.3
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.9
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.1
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 89.3
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 89.7
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.7
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.1
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 88.5
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 4.7e-130 468.0 259 89.6
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 4.7e-130 468.0 259 89.6
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 8.1e-130 467.2 260 88.8
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.8e-129 466.1 259 90.0
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.1
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 90.0
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.0e-128 462.6 260 89.6
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 87.0
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 87.7
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.0
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 85.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 85.4
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 86.6
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.4e-126 456.4 277 84.1
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 85.8
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.2e-125 453.4 240 94.2
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.6e-125 451.4 256 86.7
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 7.8e-125 450.7 276 84.1
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 86.2
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 83.5
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 6.8e-121 437.6 261 83.9
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.4e-120 434.9 241 89.6
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-119 433.3 241 89.2
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.3e-116 423.3 261 83.5
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 5.6e-115 417.9 261 80.1
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 5.6e-115 417.9 261 80.1
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 2.8e-114 415.6 261 79.7
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 8.1e-114 414.1 261 75.1
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.0e-112 409.5 261 77.8
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.8e-112 407.9 266 78.2
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 6.4e-111 404.4 261 81.2
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 4.2e-110 401.7 213 92.0
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.0e-108 397.1 222 88.7
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.5e-107 392.5 261 78.5
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 7.3e-107 391.0 254 78.3
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.3e-107 391.0 337 63.5
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 3.6e-106 388.7 201 93.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.0e-105 385.2 309 69.3
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.0e-105 385.2 240 80.4
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.4e-102 376.7 200 93.0
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 7.9e-101 370.9 195 90.8
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.6e-93 345.1 257 74.3
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 6.7e-92 341.3 260 65.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.6e-88 329.3 177 89.3
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.6e-82 310.1 161 93.2
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.2e-71 273.1 229 59.8
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.1e-69 266.5 240 60.8
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.0e-60 237.7 142 85.2
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.8e-60 236.9 143 84.6
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.8e-57 226.9 135 85.2
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.1e-57 226.1 113 95.6
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.2e-48 197.6 98 93.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.6e-45 186.0 271 47.2
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 6.8e-44 181.8 109 84.4
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.4e-43 179.5 196 53.6
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-39 167.5 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 6.6e-39 165.2 135 65.9
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.6e-37 159.5 92 84.8
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 8.9e-36 154.8 195 48.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-34 151.0 100 79.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 3.9e-31 139.4 81 88.9
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 4.3e-30 136.0 83 83.1
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.8e-24 115.2 111 59.5
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 8.6e-23 111.7 64 85.9
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.6e-13 80.9 81 55.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.1e-12 78.2 56 73.2
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 8.4e-10 68.6 59 61.0
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.1e-09 68.2 62 61.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 2.1e-08 63.9 44 75.0
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 2.1e-08 63.9 35 82.9
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 52 67.3
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 7.8e-08 62.0 38 73.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.7e-07 60.8 34 82.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 3.3e-06 56.6 34 76.5


User provided reference genes

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