Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 0.0e+00 1211.1 625 100.0
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.8e-297 1025.4 627 87.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 5.0e-295 1017.3 633 85.8
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.3e-258 896.3 633 78.4
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 6.0e-248 860.9 639 74.8
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.9e-223 778.5 643 68.0
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.2e-219 766.9 643 66.4
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 9.7e-214 747.3 643 64.7
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.3e-210 736.9 638 65.8
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 3.3e-206 722.2 641 63.3
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.1e-204 717.2 637 63.1
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.5e-203 713.4 642 63.9
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 7.2e-201 704.5 640 61.6
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 9.4e-201 704.1 669 59.9
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.2e-200 703.7 705 59.9
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 3.0e-199 699.1 639 61.0
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.0e-199 699.1 643 61.7
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.7e-197 692.2 637 60.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.7e-197 692.2 637 60.4
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 2.4e-196 689.5 639 60.9
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 5.2e-191 671.8 635 60.5
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 5.3e-188 661.8 641 58.2
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.1e-184 649.8 644 59.5
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.0e-182 643.3 645 56.7
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 7.5e-182 641.3 661 57.2
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.6e-179 633.6 635 57.0
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 1.6e-179 633.6 646 56.7
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.3e-178 630.6 635 57.0
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.5e-178 628.2 635 56.9
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 9.5e-177 624.4 638 58.8
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 8.0e-176 621.3 641 57.1
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.0e-175 620.9 639 56.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.0e-175 620.9 637 57.0
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 6.8e-175 618.2 635 56.1
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 2.2e-173 613.2 641 56.2
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 3.7e-173 612.5 638 56.4
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 6.3e-173 611.7 669 54.0
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 6.3e-173 611.7 639 56.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 6.3e-173 611.7 641 56.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 8.3e-173 611.3 635 56.4
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.2e-171 607.4 639 55.9
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 4.5e-171 605.5 623 56.2
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 1.7e-170 603.6 656 55.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 6.6e-170 601.7 636 55.0
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.1e-169 600.9 640 55.9
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.3e-169 599.4 631 53.9
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 9.5e-169 597.8 640 54.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 2.1e-168 596.7 638 56.0
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.5e-166 590.5 644 55.0
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.5e-166 590.5 638 55.5
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.5e-166 590.5 638 53.8
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.5e-166 590.5 639 54.1
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.7e-165 587.0 638 54.1
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.7e-165 585.9 645 54.0
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 4.9e-165 585.5 644 55.1
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 9.2e-164 581.3 650 54.2
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.0e-163 580.1 669 52.8
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.0e-162 577.8 637 54.3
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.6e-162 575.1 669 52.6
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 8.6e-162 574.7 641 54.1
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.1e-161 574.3 615 55.0
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 7.3e-161 571.6 666 51.1
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 5.2e-159 565.5 639 52.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 2.6e-158 563.1 611 53.2
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 7.5e-158 561.6 505 62.2
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 9.8e-158 561.2 637 51.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 9.2e-156 554.7 639 51.0
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 4.6e-155 552.4 643 51.3
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 6.0e-155 552.0 643 49.9
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.7e-154 550.4 634 51.1
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 3.9e-154 549.3 605 51.9
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 6.6e-154 548.5 631 52.3
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 8.6e-154 548.1 511 63.6
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.5e-153 546.6 650 50.9
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 4.3e-153 545.8 637 50.7
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 9.5e-153 544.7 646 50.9
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 9.5e-153 544.7 643 49.9
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.1e-152 543.5 636 50.5
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 2.8e-152 543.1 646 51.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 3.6e-152 542.7 691 49.3
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 3.6e-152 542.7 643 49.6
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 6.2e-152 542.0 613 53.5
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 3.1e-151 539.7 646 49.4
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 5.2e-151 538.9 641 50.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 8.9e-151 538.1 638 51.1
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.0e-150 537.0 644 51.2
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 2.2e-149 533.5 662 48.8
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 2.9e-149 533.1 634 49.5
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 2.9e-149 533.1 635 49.3
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.4e-148 530.8 649 50.4
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 4.1e-148 529.3 647 50.1
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 7.1e-148 528.5 633 49.6
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 3.5e-147 526.2 632 49.4
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.0e-146 524.6 651 51.2
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.9e-146 522.7 641 51.2
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 5.1e-146 522.3 643 49.6
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 5.6e-145 518.8 637 48.8
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 5.6e-145 518.8 569 54.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 9.5e-145 518.1 634 48.4
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.6e-144 517.3 634 48.7
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 9.9e-142 508.1 634 48.3
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.9e-141 506.5 614 48.5
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 6.4e-141 505.4 634 48.1
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 2.4e-140 503.4 642 50.6
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 5.4e-140 502.3 635 49.9
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 5.4e-140 502.3 638 49.2
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.1e-139 500.4 393 66.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 3.9e-138 496.1 639 48.4
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 3.9e-138 496.1 641 50.2
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 9.6e-137 491.5 580 52.4
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.8e-135 487.3 637 49.0
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.2e-134 484.6 640 48.8
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.0e-134 483.8 633 48.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.6e-134 483.4 645 47.3
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 6.4e-133 478.8 624 46.8
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.6e-131 474.2 637 47.4
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 8.7e-130 468.4 607 47.0
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.3e-129 466.5 642 46.0
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 4.3e-129 466.1 622 47.1
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 3.6e-128 463.0 412 64.6
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 9.9e-126 454.9 611 45.8
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 9.9e-126 454.9 608 45.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.5e-121 441.0 554 48.6
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 6.9e-119 432.2 602 47.2
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.7e-114 415.2 324 66.0
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.9e-113 414.1 639 43.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 9.6e-113 411.8 609 43.2
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 8.4e-109 398.7 608 45.4
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.9e-105 387.5 343 62.4
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.4e-100 371.3 379 59.1
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.1e-95 352.1 499 45.3
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 6.1e-91 339.3 400 52.0
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.7e-90 335.9 389 54.8
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.3e-88 329.3 250 66.0
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.2e-83 315.1 609 37.3
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.8e-80 303.9 389 49.1
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.1e-75 286.2 421 48.0
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 5.3e-71 273.1 203 69.5
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.0e-69 266.5 688 31.7
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 2.3e-66 257.7 256 57.0
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.3e-64 251.9 647 34.3
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.8e-63 248.1 574 33.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 2.7e-62 244.2 621 33.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 5.0e-61 240.0 235 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 7.2e-60 236.1 396 37.1
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 1.0e-58 232.3 243 51.4
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.4e-57 226.9 259 55.2
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.9e-47 194.9 228 51.8
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.4e-47 193.4 325 40.6
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.5e-44 184.5 258 51.6
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.3e-42 177.9 176 58.5
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 9.2e-39 166.0 90 91.1
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-37 161.8 264 43.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-36 158.7 264 41.7
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 7.3e-36 156.4 288 39.2
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-35 155.6 95 82.1
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.1e-31 142.5 360 31.4
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.4e-31 141.4 141 50.4
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 8.6e-29 132.9 203 46.8
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.5e-28 132.1 255 41.6
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.2e-26 123.6 185 43.2
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.6e-25 121.3 181 43.6
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.8e-24 117.5 217 38.7
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 3.5e-22 110.9 323 35.0
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.1e-18 97.8 75 60.0
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-16 91.7 164 39.6
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 4.9e-16 90.5 458 24.2
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 6.4e-16 90.1 249 34.9
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.1e-15 89.4 95 49.5
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 4.3e-12 77.4 194 32.5
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.4e-08 63.2 65 55.4
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.4e-07 62.4 88 40.9
Gohir.D02G094850 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.3e-07 59.7 59 49.2


User provided reference genes

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