Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 0.0e+00 1342.4 699 100.0
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 0.0e+00 1152.9 761 81.2
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 0.0e+00 1139.4 754 80.6
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 0.0e+00 1079.3 740 78.6
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.7e-291 1005.7 758 70.8
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 3.8e-283 978.0 755 69.0
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 4.2e-282 974.5 701 72.8
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.5e-279 966.1 766 68.1
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 1.6e-278 962.6 750 68.8
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.3e-275 953.0 763 68.2
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.8e-275 951.4 756 68.1
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.1e-274 949.9 763 67.4
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.7e-273 945.3 763 66.7
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 6.0e-273 944.1 724 69.6
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.0e-272 941.8 748 67.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 8.7e-272 940.3 757 67.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 4.3e-271 937.9 740 68.1
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.3e-270 936.4 757 66.8
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.6e-270 936.0 740 67.7
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.6e-270 936.0 740 67.7
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 4.0e-269 931.4 739 68.1
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.2e-268 929.9 700 70.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.7e-267 926.0 723 68.0
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.1e-266 923.3 751 65.0
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 2.7e-265 918.7 722 69.4
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.3e-264 916.4 794 64.5
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 5.1e-264 914.4 741 66.7
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.5e-263 912.9 760 64.9
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 2.5e-263 912.1 751 65.1
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 2.1e-262 909.1 754 64.6
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.7e-262 908.3 798 62.9
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 6.3e-262 907.5 732 66.1
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 3.1e-261 905.2 732 66.3
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.1e-261 904.8 767 64.5
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 5.3e-261 904.4 745 65.8
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.2e-260 903.3 792 62.2
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 4.5e-260 901.4 769 64.1
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 2.9e-259 898.7 737 64.0
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 2.9e-259 898.7 737 65.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 5.5e-258 894.4 740 66.2
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.3e-256 889.8 732 65.7
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 8.7e-256 887.1 736 63.6
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.5e-255 886.3 765 61.6
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 3.0e-248 862.1 741 61.3
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.0e-248 862.1 724 62.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 3.0e-248 862.1 733 64.0
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.1e-247 860.1 695 64.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.1e-247 860.1 778 62.6
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.7e-246 856.3 762 61.5
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 6.3e-246 854.4 763 60.3
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 8.2e-246 854.0 741 62.2
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.4e-245 852.4 740 62.2
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 9.1e-245 850.5 747 62.2
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.0e-243 847.0 760 60.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.5e-243 844.0 810 59.0
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.2e-242 842.0 792 59.0
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.6e-241 839.7 669 66.5
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.5e-239 833.2 740 61.5
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 7.4e-239 830.9 702 61.5
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.7e-238 829.7 714 62.2
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 9.1e-237 823.9 710 61.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.3e-235 820.1 759 59.0
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.9e-234 816.2 753 59.2
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 3.0e-232 808.9 702 62.1
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 8.8e-232 807.4 772 57.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.2e-231 807.0 689 60.8
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 5.7e-231 804.7 758 59.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 7.5e-231 804.3 699 60.7
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 9.7e-231 803.9 776 58.1
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 4.8e-230 801.6 684 61.0
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.8e-229 799.7 685 61.5
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.1e-229 798.9 737 60.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 3.1e-229 798.9 689 60.1
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 4.1e-229 798.5 701 60.5
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 2.7e-228 795.8 775 56.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.0e-227 791.6 692 59.2
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.5e-226 790.0 688 60.0
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.5e-223 780.0 766 55.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 2.8e-222 775.8 699 59.5
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.6e-220 770.0 766 55.1
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.7e-220 769.2 928 51.9
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.5e-218 762.7 732 57.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 3.3e-218 762.3 775 54.3
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 7.2e-218 761.1 735 58.6
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 8.9e-216 754.2 735 58.5
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 3.8e-211 738.8 769 52.8
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.9e-210 736.5 713 53.3
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-208 729.6 699 56.8
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.9e-198 695.3 637 60.6
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 8.3e-198 694.5 734 54.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.1e-194 684.1 703 54.8
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 3.1e-192 676.0 706 54.1
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 3.1e-192 676.0 706 54.1
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 3.1e-192 676.0 706 54.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.1e-185 651.4 434 75.6
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.4e-184 649.8 663 54.8
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.9e-179 632.5 611 59.1
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 8.1e-177 624.8 557 60.3
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 6.4e-174 615.1 744 46.4
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 5.3e-168 595.5 674 50.3
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.5e-164 582.8 524 61.5
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 3.5e-164 582.8 835 42.4
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 5.3e-160 568.9 398 71.6
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 7.1e-157 558.5 504 64.3
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 3.7e-153 546.2 691 44.3
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 4.5e-151 539.3 615 52.8
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.9e-150 536.6 442 61.1
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.4e-149 534.3 579 49.6
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 7.9e-148 528.5 492 59.1
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 5.0e-134 482.6 496 57.5
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 8.0e-116 422.2 260 78.5
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 3.0e-107 393.7 572 44.1
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 7.7e-103 379.0 492 49.4
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 6.6e-86 322.8 354 51.7
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.7e-78 298.1 232 70.7
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 8.6e-78 295.8 194 72.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 9.2e-64 249.2 173 74.0
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.3e-53 214.2 143 70.6
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.3e-46 192.2 143 63.6
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.1e-46 190.3 118 78.8
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.5e-45 188.7 142 62.7
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.6e-42 177.9 131 63.4
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.4e-42 177.6 142 59.9
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.0e-38 166.0 99 79.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.7e-37 160.2 114 71.9
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.9e-32 145.2 86 79.1
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-31 140.2 157 41.4
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 6.9e-27 126.7 101 63.4
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.6e-26 124.8 91 67.0
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.0e-25 122.9 74 79.7
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 9.4e-24 116.3 207 33.8
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.1e-23 115.2 92 58.7
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.1e-23 115.2 92 58.7
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 9.7e-21 106.3 415 24.6
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 2.2e-20 105.1 153 37.3
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 5.3e-19 100.5 542 21.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 6.3e-12 77.0 332 24.4
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.1e-11 74.3 54 66.7
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 9.1e-11 73.2 58 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 3.8e-09 67.8 70 54.3
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 3.2e-08 64.7 65 53.8
Medtr8g106830 Medicago truncatula HOM05D004031 ORTHO05D006678 8.8e-06 56.6 49 63.3


User provided reference genes

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