Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 9.8e-200 699.9 347 100.0
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 5.8e-192 674.1 347 96.0
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 7.6e-184 647.1 348 90.8
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 6.0e-181 637.5 355 89.3
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 3.9e-164 581.6 351 81.5
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 3.3e-163 578.6 352 80.7
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.0e-160 569.3 349 81.1
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.6e-160 568.9 348 80.5
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 1.4e-158 563.1 350 77.4
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 1.4e-158 563.1 350 77.7
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.4e-158 563.1 350 77.7
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 9.3e-158 560.5 350 77.1
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 1.6e-157 559.7 361 76.5
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 2.1e-157 559.3 353 79.0
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 4.6e-157 558.1 354 77.4
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 7.9e-157 557.4 353 76.8
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 1.8e-156 556.2 355 76.6
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 1.8e-156 556.2 348 77.9
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 8.7e-156 553.9 353 77.9
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 8.7e-156 553.9 351 76.1
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 7.4e-155 550.8 353 75.6
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 9.6e-155 550.4 347 76.4
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 9.6e-155 550.4 352 76.1
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.1e-154 549.3 351 75.5
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 3.7e-154 548.5 354 76.6
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 6.2e-154 547.7 347 77.8
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 5.3e-153 544.7 349 74.8
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 6.9e-153 544.3 360 73.6
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 6.9e-153 544.3 363 73.0
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 6.9e-153 544.3 354 75.4
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.2e-152 543.5 349 74.5
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 2.6e-152 542.3 352 74.4
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 2.6e-152 542.3 365 73.4
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 4.5e-152 541.6 354 74.9
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 3.8e-151 538.5 354 72.6
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 4.9e-151 538.1 352 74.4
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 6.5e-151 537.7 351 73.8
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 8.4e-151 537.3 358 71.8
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 1.9e-150 536.2 353 73.4
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 4.2e-150 535.0 349 72.5
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 4.2e-150 535.0 351 74.4
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 9.3e-150 533.9 353 72.5
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.2e-149 533.5 351 73.2
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 1.6e-149 533.1 351 72.9
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 2.7e-149 532.3 356 73.0
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 3.5e-149 531.9 352 73.6
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 6.0e-149 531.2 347 73.8
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 6.0e-149 531.2 352 71.6
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 7.9e-149 530.8 361 70.6
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 7.9e-149 530.8 360 70.8
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 7.9e-149 530.8 356 72.8
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 7.9e-149 530.8 351 72.4
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 7.9e-149 530.8 355 72.1
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 7.9e-149 530.8 354 71.8
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 7.9e-149 530.8 352 70.7
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 1.8e-148 529.6 351 72.4
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.8e-148 529.6 360 70.8
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 2.3e-148 529.3 356 71.9
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.3e-148 529.3 355 71.5
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 3.0e-148 528.9 352 70.5
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 3.9e-148 528.5 349 74.2
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 6.7e-148 527.7 355 70.7
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 6.7e-148 527.7 349 71.9
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 8.7e-148 527.3 361 69.8
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 8.7e-148 527.3 353 72.0
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 8.7e-148 527.3 355 71.8
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 8.7e-148 527.3 351 72.9
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.1e-147 526.9 352 73.0
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 1.5e-147 526.6 361 70.6
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 4.3e-147 525.0 353 72.8
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 5.7e-147 524.6 356 72.2
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 9.7e-147 523.9 353 72.8
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.6e-146 523.1 356 71.3
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 2.8e-146 522.3 347 73.2
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 3.7e-146 521.9 349 73.1
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 1.8e-145 519.6 343 74.9
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.1e-145 518.8 361 70.6
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 6.9e-145 517.7 349 70.8
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 6.9e-145 517.7 347 70.3
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 9.0e-145 517.3 365 68.5
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 2.0e-144 516.2 358 70.4
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.6e-144 515.8 354 70.1
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.4e-144 515.4 350 70.6
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 5.9e-144 514.6 355 71.3
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 7.7e-144 514.2 347 71.2
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 7.7e-144 514.2 358 70.9
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 7.7e-144 514.2 355 70.4
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 1.3e-143 513.5 356 70.2
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.3e-143 513.5 350 69.1
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 1.3e-143 513.5 357 69.7
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 1.3e-143 513.5 364 69.0
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.7e-143 513.1 352 70.2
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.7e-143 513.1 355 69.0
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.2e-143 512.7 350 69.7
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 2.9e-143 512.3 394 65.0
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 2.9e-143 512.3 356 69.4
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 5.0e-143 511.5 360 68.1
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 6.5e-143 511.1 359 69.4
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.1e-142 510.4 360 68.1
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 1.9e-142 509.6 349 70.8
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 3.2e-142 508.8 347 70.0
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 4.2e-142 508.4 358 69.6
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 5.5e-142 508.1 356 68.5
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 7.2e-142 507.7 361 67.3
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 6.1e-141 504.6 355 68.5
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 6.1e-141 504.6 350 69.1
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.3e-140 502.7 351 69.5
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 6.3e-138 494.6 348 69.3
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 2.0e-136 489.6 349 68.2
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 1.9e-134 483.0 334 69.5
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.9e-134 483.0 350 67.1
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.9e-134 483.0 352 66.8
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 5.5e-134 481.5 351 67.5
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.1e-133 479.6 348 67.0
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 3.6e-133 478.8 354 65.8
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.0e-132 477.2 357 65.8
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 5.1e-132 474.9 351 65.8
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.3e-130 470.3 351 62.7
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.4e-129 466.8 354 65.5
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 9.1e-129 464.2 327 68.2
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 1.5e-128 463.4 351 64.7
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 7.7e-128 461.1 364 61.0
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 5.0e-127 458.4 351 61.3
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 6.5e-127 458.0 353 60.9
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 5.5e-126 454.9 359 61.0
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 5.5e-126 454.9 361 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 6.1e-125 451.4 350 62.0
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 6.1e-125 451.4 356 60.7
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.4e-124 450.3 353 61.2
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.6e-117 426.8 304 69.1
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 2.2e-114 416.4 294 69.0
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 1.8e-113 413.3 293 69.6
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.0e-108 395.6 350 58.9
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.0e-103 380.9 330 60.0
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 1.0e-103 380.9 290 64.8
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 1.9e-102 376.7 347 57.3
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.4e-100 370.5 271 68.3
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.4e-75 285.8 215 68.8
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 2.2e-74 283.5 349 41.8
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.4e-73 280.0 272 53.3
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 2.8e-69 266.5 241 61.0
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 2.4e-65 253.4 348 41.1
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.2e-65 252.7 156 74.4
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 4.3e-62 242.7 356 36.8
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.3e-58 231.1 193 63.2
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.8e-53 212.6 115 85.2
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 6.4e-50 202.2 130 68.5
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.9e-49 200.7 126 72.2
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 5.5e-33 146.0 139 54.7
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.6e-32 144.4 85 71.8
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.1e-32 144.1 85 71.8
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.6e-32 142.9 85 70.6
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 7.9e-32 142.1 141 55.3
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 1.9e-30 137.5 157 49.7
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.5e-30 137.1 85 68.2
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.4e-25 121.3 106 55.7
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 9.4e-25 118.6 185 41.6
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 1.2e-24 118.2 182 37.4
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 4.8e-21 106.3 58 81.0
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 4.8e-21 106.3 63 76.2
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 4.8e-21 106.3 58 81.0
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 9.1e-20 102.1 139 36.7
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 1.2e-19 101.7 75 61.3
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.5e-19 101.3 59 72.9
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.1e-17 95.1 59 72.9
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 9.4e-17 92.0 64 60.9
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 9.4e-17 92.0 55 74.5
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.6e-16 91.3 61 67.2
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.3e-15 87.4 80 58.8
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 5.7e-14 82.8 75 54.7
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.2e-13 80.9 37 83.8
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 8.2e-13 79.0 49 61.2
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 1.4e-12 78.2 149 29.5
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 9.1e-12 75.5 64 54.7
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 4.5e-11 73.2 82 45.1
MCO13G471 Micromonas commoda HOM05D003641 ORTHO05D049026 4.2e-09 66.6 188 30.9
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 2.1e-08 64.3 50 56.0
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 1.0e-07 62.0 87 36.8
arahy.Tifrunner.gnm1.ann1.5I9U23 Arachis hypogaea HOM05D003641 ORTHO05D085625 1.4e-07 61.6 116 38.8
Sopen02g001110 Solanum pennellii HOM05D003641 ORTHO05D004915 1.1e-06 58.5 96 45.8
SGA_v2.0_scaffold196G40950 Striga asiatica HOM05D003641 ORTHO05D403144 9.7e-06 55.5 53 49.1


User provided reference genes

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