Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.4e-165 586.3 301 100.0
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 1.5e-143 513.1 305 85.6
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 5.3e-141 504.6 301 85.0
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 2.5e-119 432.6 306 74.5
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 9.3e-114 414.1 308 72.1
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 5.7e-111 404.8 313 70.0
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 1.3e-110 403.7 304 69.4
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 1.0e-107 394.0 302 67.5
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 1.7e-107 393.3 311 65.0
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 2.2e-107 392.9 307 68.1
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.4e-106 390.2 308 68.8
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 3.2e-106 389.0 308 67.2
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 2.1e-105 386.3 311 67.5
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 4.7e-105 385.2 300 68.3
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 6.1e-105 384.8 305 66.2
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 1.0e-104 384.0 308 65.9
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 3.9e-104 382.1 304 65.1
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 3.9e-104 382.1 308 66.6
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.1e-104 381.7 300 67.7
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 5.1e-104 381.7 307 65.5
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 6.7e-104 381.3 306 64.7
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 2.6e-103 379.4 301 67.8
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 3.3e-103 379.0 308 66.2
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 4.4e-103 378.6 310 66.8
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 4.4e-103 378.6 306 65.7
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 5.7e-103 378.3 281 69.0
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.7e-102 376.7 319 64.9
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 2.8e-102 375.9 211 83.4
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 8.2e-102 374.4 224 80.4
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 1.1e-101 374.0 280 67.1
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 2.4e-101 372.9 305 64.9
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 2.4e-101 372.9 316 63.3
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 5.3e-101 371.7 300 64.7
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 9.1e-101 370.9 319 64.3
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 1.2e-100 370.5 315 64.1
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 1.2e-100 370.5 283 67.5
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 1.5e-100 370.2 301 64.5
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 2.0e-100 369.8 281 65.8
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 2.6e-100 369.4 237 77.2
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 7.7e-100 367.9 257 71.2
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 7.7e-100 367.9 311 63.7
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 1.3e-99 367.1 299 63.9
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 1.3e-99 367.1 238 76.1
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 2.9e-99 365.9 299 64.2
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 2.9e-99 365.9 304 63.2
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 3.8e-99 365.5 237 75.9
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 8.5e-99 364.4 211 79.1
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 1.4e-98 363.6 282 68.1
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 1.9e-98 363.2 211 79.6
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 3.2e-98 362.5 299 63.9
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 4.2e-98 362.1 274 66.4
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 4.2e-98 362.1 307 63.2
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 4.2e-98 362.1 299 63.2
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 7.2e-98 361.3 301 63.1
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 1.2e-97 360.5 300 63.7
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 2.7e-97 359.4 211 79.6
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 4.7e-97 358.6 261 70.9
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 6.1e-97 358.2 250 71.2
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 6.1e-97 358.2 202 81.2
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 1.4e-96 357.1 224 76.3
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 3.0e-96 355.9 288 67.4
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 3.9e-96 355.5 208 78.4
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 5.2e-96 355.1 234 73.5
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 6.7e-96 354.8 303 63.0
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 8.8e-96 354.4 219 76.7
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 2.0e-95 353.2 202 81.2
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 2.6e-95 352.8 303 62.7
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 4.4e-95 352.1 215 77.2
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 4.4e-95 352.1 283 67.5
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 7.4e-95 351.3 259 69.9
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 1.3e-94 350.5 219 76.3
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 4.8e-94 348.6 235 71.9
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 4.8e-94 348.6 235 71.9
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 8.2e-94 347.8 221 75.1
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 1.4e-93 347.1 235 71.9
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 1.8e-93 346.7 304 60.5
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.4e-93 346.3 300 64.3
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 2.4e-93 346.3 303 61.7
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 3.5e-92 342.4 268 70.1
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 4.5e-92 342.0 204 75.5
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 7.7e-92 341.3 267 66.7
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 7.7e-92 341.3 324 59.3
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 6.5e-91 338.2 316 59.5
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 9.4e-90 334.3 299 58.5
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 1.2e-89 334.0 291 62.9
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 3.6e-89 332.4 261 64.8
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 6.7e-88 328.2 263 65.0
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 1.5e-87 327.0 291 61.9
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 2.6e-87 326.2 262 63.7
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 6.3e-86 321.6 242 66.9
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.1e-85 320.9 226 68.1
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 1.2e-84 317.4 265 63.0
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 2.0e-84 316.6 214 72.9
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.9e-82 310.1 259 60.6
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 3.2e-82 309.3 303 58.4
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 3.2e-82 309.3 208 69.7
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 7.2e-82 308.1 278 61.2
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 1.6e-81 307.0 231 63.6
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 2.7e-81 306.2 230 63.5
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.5e-79 300.4 205 68.8
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 2.0e-79 300.1 251 61.0
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 5.7e-79 298.5 256 59.4
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 1.3e-78 297.4 240 60.8
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 2.9e-75 286.2 156 85.3
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 5.5e-74 282.0 159 83.6
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 8.0e-73 278.1 207 67.6
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 8.9e-72 274.6 199 62.3
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 1.2e-71 274.2 151 84.8
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 1.5e-71 273.9 159 78.0
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 2.3e-67 260.0 159 74.8
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.8e-64 250.4 299 52.8
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 1.5e-63 247.3 302 47.7
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 1.7e-62 243.8 224 52.2
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 9.2e-61 238.0 141 78.0
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 4.0e-56 222.6 307 49.2
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 1.2e-55 221.1 124 86.3
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 1.5e-55 220.7 138 76.8
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 9.8e-55 218.0 200 48.5
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 9.2e-53 211.5 124 82.3
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 3.5e-52 209.5 205 54.6
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 5.8e-47 192.2 119 78.2
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 6.4e-46 188.7 128 68.8
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 4.1e-45 186.0 111 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 9.2e-45 184.9 124 64.5
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 3.0e-43 179.9 178 52.8
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 4.0e-40 169.5 115 73.0
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 4.0e-40 169.5 115 73.0
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 6.0e-36 155.6 175 49.7
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 1.2e-31 141.4 160 42.5
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 3.4e-31 139.8 90 77.8
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 4.2e-29 132.9 78 80.8
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 1.2e-23 114.8 101 63.4
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 3.4e-23 113.2 130 50.0
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 1.6e-20 104.4 107 53.3
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 2.8e-17 93.6 154 32.5
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 2.2e-14 84.0 63 63.5
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.8e-08 64.3 143 39.2
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 7.6e-07 58.9 197 24.9
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.7e-06 57.8 171 28.1
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.7e-06 57.8 169 26.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.7e-06 57.8 171 28.1
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.9e-06 57.0 171 28.1
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.9e-06 57.0 169 26.6
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.9e-06 57.0 169 26.0
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.9e-06 57.0 171 26.3
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 3.8e-06 56.6 171 28.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 4.9e-06 56.2 171 28.1
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 4.9e-06 56.2 170 25.9
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 4.9e-06 56.2 171 28.1
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 4.9e-06 56.2 171 28.1
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 4.9e-06 56.2 170 26.5
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 4.9e-06 56.2 170 26.5
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 4.9e-06 56.2 170 27.1
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 6.5e-06 55.8 171 28.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 6.5e-06 55.8 170 25.9
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 6.5e-06 55.8 97 33.0
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 6.5e-06 55.8 197 23.4
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 6.5e-06 55.8 169 30.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 8.4e-06 55.5 171 28.1
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 8.4e-06 55.5 166 27.1
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 8.4e-06 55.5 166 27.1
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 8.4e-06 55.5 166 27.1


User provided reference genes

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