Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.3e-107 391.3 198 100.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.8e-90 335.5 199 84.9
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.8e-89 332.8 193 86.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.1e-89 332.0 200 83.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.8e-72 274.6 196 75.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.9e-67 259.6 198 66.2
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.6e-66 256.5 201 67.7
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.6e-66 256.5 198 66.2
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.7e-66 255.4 198 66.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.1e-65 253.8 201 68.2
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.0e-64 249.6 202 68.3
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.5e-62 241.5 190 65.8
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.5e-61 238.8 190 64.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 4.6e-61 238.4 205 62.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 6.7e-60 234.6 210 64.3
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.9e-59 233.0 207 61.8
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.3e-59 231.9 209 62.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 5.7e-59 231.5 216 60.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 6.3e-58 228.0 183 68.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.1e-57 227.3 198 62.1
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.1e-57 225.7 204 60.8
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.3e-57 224.9 211 61.6
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-56 223.8 211 60.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-56 223.0 198 61.1
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.6e-56 222.6 194 63.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.4e-56 222.2 212 59.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.5e-56 221.9 204 59.8
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 5.9e-56 221.5 210 59.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.9e-56 221.5 211 59.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.9e-56 221.5 210 59.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.9e-56 221.5 210 59.5
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-55 220.3 193 61.1
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.0e-55 218.4 193 59.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.0e-55 218.4 204 59.3
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.1e-54 217.2 194 59.8
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.4e-54 216.9 193 59.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 7.2e-54 214.5 196 61.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.7e-53 212.6 191 62.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.5e-53 212.2 216 60.2
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.0e-52 210.7 185 60.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.5e-51 206.1 174 63.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 9.7e-51 204.1 176 64.8
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-49 199.9 175 59.4
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.9e-49 198.0 197 55.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.0e-49 197.6 199 55.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.6e-48 196.1 177 59.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.6e-48 196.1 207 56.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.2e-47 193.0 198 56.6
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.8e-47 192.2 213 55.4
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.4e-46 190.3 213 51.6
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.4e-46 190.3 215 54.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.5e-46 189.5 196 54.6
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.5e-46 188.3 191 56.0
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 9.4e-46 187.6 202 54.0
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.6e-45 186.8 202 56.4
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.1e-45 186.4 178 61.8
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.6e-45 185.3 200 53.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.4e-44 183.7 182 56.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.0e-44 182.6 212 50.5
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.9e-44 182.2 188 54.8
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 6.7e-44 181.4 176 54.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 8.8e-44 181.0 187 55.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.5e-43 179.5 201 52.2
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 3.3e-43 179.1 210 49.5
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.3e-43 179.1 210 51.4
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.3e-43 179.1 217 52.1
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.3e-43 179.1 204 54.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 7.4e-43 177.9 225 48.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 7.4e-43 177.9 203 55.2
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.3e-42 177.2 204 51.5
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 6.3e-42 174.9 233 49.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.4e-41 173.7 204 52.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.1e-41 172.6 193 51.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 5.3e-41 171.8 214 49.5
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.5e-40 170.2 201 52.2
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.0e-40 169.9 214 50.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.6e-40 169.5 197 51.8
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.6e-40 169.5 202 52.0
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.6e-40 169.5 210 49.5
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.4e-40 169.1 207 51.7
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 4.5e-40 168.7 218 47.2
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-39 167.2 203 52.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-39 166.8 183 55.7
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.7e-39 166.8 181 53.6
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.0e-39 165.2 182 55.5
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.0e-39 165.2 202 51.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.0e-39 165.2 199 52.8
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 8.5e-39 164.5 205 49.8
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-38 164.1 199 51.8
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.4e-38 163.7 206 51.5
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.5e-38 162.9 207 50.7
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.5e-38 162.9 205 48.8
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 5.5e-38 161.8 198 46.5
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.1e-37 159.8 220 46.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.7e-37 159.5 218 48.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 4.7e-37 158.7 194 52.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.1e-37 158.3 219 47.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.3e-36 156.4 202 47.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.3e-36 156.4 181 50.3
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.0e-36 156.0 206 48.5
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.0e-36 156.0 207 45.9
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.1e-36 155.2 201 47.3
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.5e-35 153.7 182 52.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.6e-35 152.9 210 44.3
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.4e-35 152.1 187 49.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 7.4e-35 151.4 191 49.2
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 9.7e-35 151.0 190 48.9
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-34 150.6 202 48.5
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.2e-34 149.8 190 47.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.2e-34 149.8 205 42.9
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.7e-34 149.1 188 46.8
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 4.8e-34 148.7 186 48.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.3e-34 148.3 213 45.1
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 6.3e-34 148.3 185 49.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 8.2e-34 147.9 196 46.4
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.4e-33 147.1 189 49.7
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.1e-33 145.6 184 47.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.1e-33 145.6 187 48.1
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.1e-33 145.6 187 50.3
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.3e-33 145.2 167 53.3
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 7.0e-33 144.8 180 50.6
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 7.0e-33 144.8 187 47.6
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 7.0e-33 144.8 186 47.8
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 9.1e-33 144.4 183 51.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-32 143.3 179 49.2
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.0e-32 143.3 130 57.7
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.6e-32 142.9 181 49.2
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.6e-32 142.9 179 49.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.5e-32 142.1 181 48.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-31 140.6 182 49.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-31 140.2 180 45.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.7e-31 140.2 205 44.9
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.2e-31 139.8 191 42.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-31 139.4 190 48.9
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.5e-31 138.3 185 46.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.5e-31 138.3 154 49.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.5e-31 137.9 198 48.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.5e-31 137.9 198 48.0
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-30 137.5 108 63.9
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-30 136.7 172 49.4
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.2e-30 136.0 196 48.0
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-30 135.2 171 49.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.5e-30 135.2 183 46.4
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-29 133.7 180 47.8
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.7e-29 132.9 205 43.9
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.7e-29 132.9 122 58.2
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.7e-29 132.1 157 49.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.3e-28 129.8 187 47.1
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-28 129.4 195 43.6
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 3.0e-28 129.4 195 43.6
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 4.0e-28 129.0 196 43.4
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.0e-28 129.0 151 47.7
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 5.2e-28 128.6 155 45.8
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 8.8e-28 127.9 177 45.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.5e-27 127.1 183 46.4
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.0e-27 126.7 149 51.0
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.4e-27 125.6 138 50.0
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.7e-26 122.5 137 49.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 4.1e-25 119.0 184 40.8
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.2e-24 117.5 162 43.8
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.7e-24 116.3 172 44.2
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.9e-24 115.2 186 44.1
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.5e-23 111.7 161 39.8
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.5e-23 111.7 117 51.3
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-22 110.9 190 41.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-22 110.5 190 41.1
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-22 109.8 190 40.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.2e-22 109.4 185 42.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.2e-22 109.4 194 42.8
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.2e-22 109.0 193 41.5
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.2e-22 109.0 183 42.1
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.4e-22 107.8 125 53.6
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-21 105.9 183 41.5
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.0e-20 104.4 194 40.7
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.4e-20 104.0 192 40.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.4e-19 99.4 112 51.8
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.4e-19 99.0 168 38.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.8e-17 93.6 275 33.5
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.1e-14 84.3 95 46.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.5e-14 83.2 125 40.0
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.2e-11 74.3 154 36.4
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.5e-11 73.9 207 30.4
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.3e-10 68.6 75 48.0
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.9e-08 62.0 157 31.2
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 5.6e-06 55.5 175 33.1


User provided reference genes

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