Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 4.2e-209 731.1 364 100.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 2.0e-179 632.5 425 78.4
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.3e-130 469.5 356 68.8
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 4.0e-127 458.8 355 67.3
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 6.4e-125 451.4 357 66.4
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.5e-121 440.3 360 65.8
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.5e-121 440.3 347 66.9
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.5e-121 439.5 341 68.0
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.5e-121 439.5 323 69.3
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 5.6e-121 438.3 320 71.9
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 6.2e-120 434.9 328 69.5
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 3.1e-119 432.6 327 68.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.0e-118 429.9 347 64.3
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 7.6e-118 427.9 356 64.0
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 4.9e-117 425.2 348 62.6
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 5.4e-116 421.8 270 77.4
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 7.8e-115 417.9 306 69.0
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.0e-114 416.0 358 61.2
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 2.5e-113 412.9 356 61.2
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.3e-112 410.6 354 62.4
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 1.3e-112 410.6 322 65.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.6e-112 409.1 349 63.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.1e-111 407.5 350 62.0
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.8e-111 406.8 300 69.3
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.4e-111 406.4 343 63.3
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.6e-110 402.9 345 62.9
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 4.4e-110 402.1 309 67.0
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 7.6e-110 401.4 293 67.2
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 9.9e-110 401.0 314 66.2
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.3e-109 400.6 366 57.7
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.2e-109 399.8 335 62.7
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.2e-109 399.8 345 58.6
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.8e-109 399.1 345 63.2
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 4.9e-109 398.7 321 61.7
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 6.4e-109 398.3 364 58.5
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 6.4e-109 398.3 350 60.0
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 6.4e-109 398.3 363 57.9
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 1.4e-108 397.1 360 61.1
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 5.4e-108 395.2 343 60.6
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 5.4e-108 395.2 357 61.3
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 7.1e-108 394.8 349 61.0
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.6e-107 393.7 366 55.5
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.1e-107 393.3 364 57.7
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 2.7e-107 392.9 293 65.5
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 3.5e-107 392.5 335 62.7
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.5e-107 392.5 297 67.3
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 7.8e-107 391.3 321 62.0
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.0e-106 391.0 364 60.7
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.3e-106 390.6 263 74.1
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.7e-106 390.2 383 54.8
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 3.0e-106 389.4 261 72.8
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 5.1e-106 388.7 364 57.4
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.5e-105 387.1 271 71.6
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.9e-105 386.7 325 63.7
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 3.3e-105 386.0 280 69.6
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 5.6e-105 385.2 370 60.0
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-104 384.0 294 66.7
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.3e-104 384.0 332 62.0
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 2.1e-104 383.3 296 69.3
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.8e-104 382.9 270 69.3
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.1e-103 380.9 307 61.6
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.4e-103 379.8 267 68.5
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.4e-103 379.8 284 69.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 4.0e-103 379.0 274 70.1
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.3e-103 378.6 276 69.9
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.2e-102 377.5 271 69.4
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.2e-102 377.5 300 64.7
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.5e-102 377.1 265 67.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 2.6e-102 376.3 263 70.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.4e-102 375.9 300 64.7
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 3.4e-102 375.9 268 72.0
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 4.5e-102 375.6 265 69.8
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 4.5e-102 375.6 271 69.4
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 9.9e-102 374.4 285 63.5
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 2.2e-101 373.2 265 69.8
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.9e-100 370.2 272 67.6
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.9e-100 370.2 262 70.6
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.9e-100 370.2 276 66.7
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 3.2e-100 369.4 263 70.0
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 5.4e-100 368.6 288 63.9
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.2e-99 367.5 290 64.5
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.2e-99 367.5 311 60.5
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.7e-99 366.3 253 73.1
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 4.6e-99 365.5 260 68.5
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 6.0e-99 365.2 262 68.7
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 6.0e-99 365.2 262 68.7
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 6.0e-99 365.2 264 66.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 6.0e-99 365.2 276 65.9
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.0e-98 364.4 279 65.6
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 2.3e-98 363.2 268 67.5
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 1.5e-97 360.5 215 81.4
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 1.5e-97 360.5 441 49.4
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 9.6e-97 357.8 237 75.1
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 3.1e-95 352.8 272 63.6
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 3.1e-95 352.8 268 66.0
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 7.6e-94 348.2 247 69.6
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.3e-93 347.4 259 64.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.7e-93 347.1 250 70.0
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.4e-92 344.0 266 63.5
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 3.5e-91 339.3 238 69.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.6e-88 330.5 215 74.9
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 3.1e-87 326.2 270 62.2
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.3e-85 320.9 226 72.6
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.7e-85 320.5 266 59.4
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.2e-85 320.1 266 59.4
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.5e-84 316.6 266 59.4
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 8.2e-80 301.6 280 60.0
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.4e-79 300.8 183 79.8
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.7e-77 293.9 267 55.1
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 8.5e-77 291.6 250 61.2
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.4e-74 284.3 190 69.5
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.8e-71 273.9 277 51.3
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 7.9e-67 258.5 210 58.6
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.7e-65 252.3 262 49.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.8e-61 239.6 249 48.2
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.7e-51 206.1 263 46.4
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.8e-50 204.1 212 49.1
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.7e-48 197.6 218 52.8
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 3.7e-48 196.4 124 74.2
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 7.7e-46 188.7 124 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 5.5e-36 156.0 168 49.4
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.7e-24 117.9 83 68.7
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 8.6e-21 105.5 74 75.7
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.1e-20 105.1 72 70.8
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.8e-17 92.0 61 72.1
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.8e-17 92.0 61 72.1
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.7e-14 84.0 78 57.7
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 6.0e-14 82.8 166 34.3
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 3.9e-13 80.1 116 37.9
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 5.1e-13 79.7 160 35.0
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.5e-12 78.2 116 37.1
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.5e-12 78.2 145 33.8
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 7.3e-12 75.9 124 33.1
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 9.5e-12 75.5 116 37.1
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.2e-11 75.1 116 36.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.6e-11 74.7 145 32.4
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.6e-11 74.7 156 33.3
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.1e-11 74.3 200 30.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 2.8e-11 73.9 201 27.9
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 4.7e-11 73.2 123 35.0
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 4.7e-11 73.2 148 32.4
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 4.7e-11 73.2 127 33.1
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 6.2e-11 72.8 123 35.0
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 6.2e-11 72.8 116 36.2
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 8.1e-11 72.4 145 33.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.1e-10 72.0 126 31.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.1e-10 72.0 116 35.3
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.8e-10 71.2 127 32.3
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 1.8e-10 71.2 116 33.6
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.3e-10 70.9 127 32.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.3e-10 70.9 116 33.6
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.1e-10 70.5 156 29.5
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.1e-10 70.5 127 32.3
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.0e-10 70.1 59 57.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 6.8e-10 69.3 127 32.3
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 6.8e-10 69.3 141 31.2
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 8.9e-10 68.9 116 33.6
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 8.9e-10 68.9 116 33.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 8.9e-10 68.9 146 30.8
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.2e-09 68.6 116 32.8
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.2e-09 68.6 124 32.3
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.6e-09 67.4 143 30.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 3.4e-09 67.0 247 26.7
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 3.4e-09 67.0 125 34.4
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 4.4e-09 66.6 126 31.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 5.8e-09 66.2 116 35.3
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 5.8e-09 66.2 145 29.7
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 7.6e-09 65.9 131 31.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 2.2e-08 64.3 116 32.8
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.9e-08 63.9 123 30.9
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 4.9e-08 63.2 90 36.7
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.4e-07 60.8 179 25.1
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 5.4e-07 59.7 120 30.8
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.6e-06 58.2 156 30.1
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.6e-06 58.2 107 29.9
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 2.1e-06 57.8 126 31.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 3.5e-06 57.0 103 32.0
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.0e-06 56.2 149 28.2


User provided reference genes

Program Settings