Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.4e-145 519.6 263 100.0
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 5.2e-92 341.7 278 70.5
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 5.5e-86 321.6 275 68.7
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 6.5e-79 298.1 281 62.6
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 2.5e-78 296.2 216 75.0
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.0e-76 290.8 223 72.2
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.2e-76 288.5 223 72.2
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 6.8e-76 288.1 247 68.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.6e-75 286.2 220 72.3
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 2.2e-74 283.1 227 68.7
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 3.7e-74 282.3 231 68.8
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 6.3e-74 281.6 221 71.0
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 8.3e-74 281.2 227 68.7
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.4e-73 280.4 216 71.3
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 3.1e-73 279.3 216 70.4
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 4.1e-73 278.9 262 63.0
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.1e-73 278.9 219 72.1
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.4e-73 278.5 211 73.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 7.0e-73 278.1 233 67.8
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.5e-72 275.4 219 68.9
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 1.3e-71 273.9 231 68.0
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 2.3e-71 273.1 227 67.4
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.9e-71 272.7 224 68.8
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 3.8e-71 272.3 217 68.7
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 5.0e-71 271.9 214 71.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 5.0e-71 271.9 223 67.7
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 8.6e-71 271.2 190 76.8
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.5e-70 270.4 278 61.2
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 1.9e-70 270.0 240 63.8
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.5e-70 268.5 193 75.1
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.2e-69 267.3 234 63.2
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-69 267.3 246 63.4
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-69 267.3 246 63.4
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.2e-69 267.3 246 63.4
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.6e-69 265.8 208 69.2
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 8.0e-69 264.6 233 65.2
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 8.0e-69 264.6 229 65.5
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 1.0e-68 264.2 192 74.5
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 1.8e-68 263.5 191 74.9
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.0e-68 262.3 227 62.6
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.0e-68 262.3 224 65.2
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 6.8e-68 261.5 192 73.4
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.2e-67 260.8 215 70.2
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 1.5e-67 260.4 222 67.1
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 1.5e-67 260.4 222 67.1
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 1.3e-66 257.3 240 62.5
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.1e-65 254.2 236 61.9
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.1e-65 254.2 221 65.6
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 1.4e-65 253.8 222 64.0
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 1.4e-65 253.8 222 64.0
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 1.4e-65 253.8 222 64.0
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 7.0e-65 251.5 195 70.8
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 7.0e-65 251.5 195 70.8
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 9.2e-65 251.1 225 64.4
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 9.2e-65 251.1 225 64.4
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 1.2e-64 250.8 311 55.0
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.2e-64 250.8 241 61.4
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 2.7e-64 249.6 219 64.8
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 3.5e-64 249.2 199 68.3
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 3.5e-64 249.2 265 58.9
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 4.5e-64 248.8 224 62.9
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 4.5e-64 248.8 199 68.3
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 7.8e-64 248.1 228 62.3
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.0e-63 247.7 224 62.9
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.7e-63 246.9 236 60.2
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.7e-63 246.9 191 71.2
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 3.8e-63 245.7 223 63.2
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 8.6e-63 244.6 264 56.1
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 8.6e-63 244.6 265 56.6
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.1e-62 244.2 233 61.4
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.5e-62 243.8 233 60.9
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.9e-62 243.4 221 63.3
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 2.5e-62 243.0 219 66.2
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 2.5e-62 243.0 191 69.6
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 3.3e-62 242.7 219 62.1
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 5.6e-62 241.9 220 61.4
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 5.6e-62 241.9 217 63.1
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.6e-61 240.4 232 59.5
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.8e-61 239.6 241 60.2
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 3.6e-61 239.2 224 61.2
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 4.7e-61 238.8 210 63.8
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 8.0e-61 238.0 241 56.4
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 1.0e-60 237.7 220 61.4
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 1.4e-60 237.3 221 61.1
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.4e-60 237.3 221 61.1
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.4e-60 237.3 221 61.1
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 1.4e-60 237.3 211 65.9
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 2.3e-60 236.5 220 62.7
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 4.0e-60 235.7 193 67.9
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.2e-59 234.2 245 57.1
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.0e-59 233.4 231 58.9
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 2.6e-59 233.0 182 68.1
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 3.4e-59 232.6 265 54.0
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 1.3e-58 230.7 186 67.2
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.2e-58 229.9 192 65.6
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.2e-58 229.9 192 65.6
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 4.9e-58 228.8 197 65.5
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 6.4e-58 228.4 148 79.1
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 8.3e-58 228.0 206 62.1
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 8.3e-58 228.0 194 67.5
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.4e-57 226.5 218 60.6
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 4.1e-57 225.7 271 54.2
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.0e-57 224.9 186 65.1
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 2.0e-56 223.4 170 70.6
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 7.8e-56 221.5 270 50.7
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 6.6e-55 218.4 227 59.5
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 1.1e-54 217.6 276 50.7
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 1.1e-54 217.6 241 53.5
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 2.1e-53 213.4 203 61.6
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.1e-52 211.1 232 57.3
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 3.1e-52 209.5 203 57.1
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 6.8e-52 208.4 169 66.9
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 1.5e-51 207.2 231 52.8
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 2.6e-51 206.5 183 61.2
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 2.9e-50 203.0 187 61.0
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 3.0e-47 193.0 259 50.2
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.1e-45 186.8 135 72.6
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 8.1e-45 184.9 234 49.1
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 3.1e-44 183.0 276 47.1
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 3.1e-44 183.0 277 46.9
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 3.1e-44 183.0 271 49.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.3e-42 177.6 238 46.6
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 2.9e-42 176.4 184 53.8
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.7e-42 176.0 225 48.0
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.4e-41 173.3 230 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 5.4e-41 172.2 212 48.1
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 1.2e-40 171.0 106 82.1
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.8e-36 157.1 101 76.2
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.4e-36 156.8 205 42.4
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 6.8e-36 155.2 107 73.8
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 6.8e-36 155.2 195 46.7
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 5.6e-30 135.6 181 45.3
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 2.4e-28 130.2 101 72.3
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.3e-23 113.6 91 62.6
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 6.6e-23 112.1 139 55.4
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.9e-22 110.5 204 35.3
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 4.8e-21 105.9 133 42.9
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 6.2e-21 105.5 102 61.8
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.4e-20 103.6 61 82.0
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.4e-17 93.6 103 57.3
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.2e-17 93.2 155 36.8
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.2e-16 91.3 74 63.5
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.9e-15 86.3 103 54.4
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 1.8e-12 77.4 71 62.0
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 3.1e-12 76.6 81 55.6
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.2e-11 74.7 78 57.7
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 4.5e-11 72.8 151 32.5
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 1.3e-10 71.2 60 66.7
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 5.5e-09 65.9 129 34.1
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 6.0e-08 62.4 129 31.0
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.3e-07 61.2 161 28.0
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 3.0e-07 60.1 50 66.0
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.9e-07 59.7 202 26.2
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 5.1e-07 59.3 145 29.0
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 5.1e-07 59.3 122 32.8
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 6.7e-07 58.9 224 25.4
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 8.7e-07 58.5 52 59.6
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 8.7e-07 58.5 52 59.6
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 8.7e-07 58.5 161 26.1
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.1e-06 58.2 206 28.6
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.5e-06 57.8 177 26.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 3.3e-06 56.6 133 30.1
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 3.3e-06 56.6 116 31.0
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.3e-06 56.6 176 25.0
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 5.6e-06 55.8 207 25.1
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 7.4e-06 55.5 132 30.3
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 9.6e-06 55.1 159 28.3
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 9.6e-06 55.1 156 28.2
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 9.6e-06 55.1 177 25.4


User provided reference genes

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