Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 0.0e+00 1218.0 655 100.0
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 0.0e+00 1164.4 655 95.4
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 4.2e-284 981.1 642 83.2
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 4.2e-284 981.1 659 78.8
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.0e-278 962.2 658 76.9
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 3.9e-274 948.0 660 77.9
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 9.6e-273 943.3 655 76.5
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 4.8e-272 941.0 660 74.4
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 6.2e-272 940.6 660 74.8
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 9.0e-271 936.8 660 74.1
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.6e-270 935.3 657 75.6
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.2e-269 932.2 657 74.9
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.2e-269 932.2 657 75.0
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 3.8e-269 931.4 657 75.2
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 8.4e-269 930.2 657 75.0
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 5.5e-268 927.5 659 74.2
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.5e-267 924.9 657 74.1
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 7.9e-267 923.7 660 74.2
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.0e-266 923.3 657 74.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.8e-266 922.5 662 73.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.1e-265 919.8 661 74.9
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 4.3e-265 917.9 634 76.7
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 7.4e-265 917.1 659 73.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.1e-263 913.3 660 73.8
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.4e-263 912.9 660 74.2
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.1e-263 911.8 659 74.2
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 9.0e-263 910.2 657 72.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.2e-262 909.8 661 73.1
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.2e-262 909.8 654 73.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 2.6e-262 908.7 660 72.7
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.7e-261 906.0 651 75.1
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 2.2e-261 905.6 657 73.4
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.5e-260 902.1 656 73.6
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 3.2e-260 901.7 657 72.9
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.4e-260 900.2 661 72.8
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.4e-260 900.2 661 72.8
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.1e-259 899.0 649 74.1
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.7e-259 898.7 655 70.8
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 3.6e-259 898.3 662 73.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.8e-258 896.0 662 71.6
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.8e-258 896.0 662 71.1
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 3.0e-258 895.2 660 72.3
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.9e-258 894.8 661 72.6
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 5.1e-258 894.4 661 72.5
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 3.3e-257 891.7 663 72.1
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.8e-256 888.6 659 73.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 2.8e-256 888.6 657 72.5
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 2.8e-256 888.6 656 71.6
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 4.8e-256 887.9 641 73.6
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 8.2e-256 887.1 636 74.4
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 2.0e-254 882.5 658 71.3
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 4.5e-254 881.3 659 72.2
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 7.7e-254 880.6 659 70.6
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 7.7e-254 880.6 663 71.3
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.0e-253 880.2 661 71.1
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 2.9e-253 878.6 659 71.5
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 6.5e-253 877.5 666 71.0
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 6.5e-253 877.5 661 70.7
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.1e-252 876.7 663 71.3
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.1e-252 876.7 660 71.7
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-252 876.3 658 71.6
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 1.9e-252 875.9 657 72.9
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 2.5e-252 875.5 661 72.0
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 3.2e-252 875.2 661 71.7
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 7.2e-252 874.0 656 70.7
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 6.1e-251 870.9 662 71.9
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 7.9e-251 870.5 663 71.2
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 7.9e-251 870.5 658 71.4
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 7.9e-251 870.5 658 70.4
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.3e-250 869.0 661 71.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 3.0e-250 868.6 658 71.6
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 3.9e-250 868.2 661 70.8
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 5.1e-250 867.8 659 71.5
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 6.7e-250 867.5 661 69.9
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.1e-249 866.7 660 71.4
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.1e-249 866.7 660 69.8
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.5e-249 866.3 659 70.4
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 2.6e-249 865.5 662 69.5
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 3.3e-249 865.1 660 69.7
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 4.4e-249 864.8 659 71.2
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 4.4e-249 864.8 658 69.0
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 3.7e-248 861.7 662 69.2
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 3.7e-248 861.7 660 69.5
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 3.1e-247 858.6 665 69.5
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.0e-245 853.6 660 69.1
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 3.8e-245 851.7 661 68.8
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.1e-244 850.1 659 68.7
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.9e-244 849.4 639 70.9
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.5e-244 849.0 617 73.1
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 5.5e-244 847.8 661 70.3
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 5.5e-244 847.8 658 69.8
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.8e-242 842.8 650 69.7
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.2e-242 841.3 657 68.9
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.1e-241 840.1 656 68.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 3.3e-241 838.6 663 67.7
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.4e-241 838.2 650 69.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.3e-240 836.6 660 67.1
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.2e-237 825.9 658 67.6
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 3.8e-237 825.1 607 72.0
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 5.0e-237 824.7 652 67.3
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.2e-235 820.1 662 65.9
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.2e-228 794.3 648 68.1
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.2e-227 793.5 660 65.5
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.8e-226 789.6 660 65.0
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.3e-224 783.5 667 64.2
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.5e-220 769.2 655 63.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.7e-219 765.0 659 61.8
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.2e-211 738.0 642 64.5
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 4.0e-210 735.3 660 60.2
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 6.6e-205 718.0 658 60.3
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 7.3e-204 714.5 557 70.4
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.2e-203 713.8 658 60.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.2e-195 687.2 662 56.6
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.8e-194 683.3 652 60.4
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.2e-190 670.6 663 57.2
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.5e-190 669.1 648 59.3
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 8.6e-189 664.5 665 56.5
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.5e-177 627.1 640 58.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.4e-168 594.7 664 52.3
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.3e-159 564.7 557 58.0
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.5e-151 540.0 638 52.8
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 8.2e-147 525.0 676 46.9
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 6.5e-144 515.4 675 43.9
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 3.5e-129 466.5 680 45.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.0e-124 450.7 355 67.0
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 7.3e-103 379.0 333 64.0
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 5.2e-93 346.3 384 51.3
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 7.5e-92 342.4 243 69.1
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.4e-69 268.5 305 52.8
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 1.0e-43 182.6 563 29.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 8.4e-43 179.5 118 80.5
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.5e-41 174.1 118 73.7
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 5.0e-27 127.1 113 64.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 6.3e-14 83.6 97 48.5
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 4.2e-10 70.9 44 79.5
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.4e-10 69.7 51 58.8
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 4.0e-08 64.3 96 37.5


User provided reference genes

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