Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 1.1e-93 346.7 176 100.0
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 1.9e-74 282.7 175 86.9
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 3.6e-73 278.5 172 80.2
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 9.2e-53 210.7 175 67.4
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 1.0e-51 207.2 183 64.5
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 1.1e-50 203.8 188 62.8
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 2.5e-50 202.6 176 65.3
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 3.3e-50 202.2 178 64.6
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 4.3e-50 201.8 178 65.2
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 1.2e-49 200.3 187 63.1
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 2.1e-49 199.5 178 64.0
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 4.7e-49 198.4 173 65.3
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 1.4e-48 196.8 174 64.4
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 1.4e-48 196.8 170 68.8
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 1.8e-48 196.4 162 67.3
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 5.2e-48 194.9 176 64.8
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 6.8e-48 194.5 176 64.2
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 6.8e-48 194.5 176 64.2
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 1.2e-47 193.7 173 64.7
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 1.2e-47 193.7 179 63.7
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 1.5e-47 193.4 170 65.3
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 1.5e-47 193.4 189 60.8
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.0e-47 193.0 176 64.2
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 3.4e-47 192.2 182 61.0
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 3.4e-47 192.2 185 62.2
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 4.4e-47 191.8 188 60.1
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 5.8e-47 191.4 179 59.8
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 5.8e-47 191.4 167 64.7
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 9.8e-47 190.7 174 60.3
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 1.7e-46 189.9 185 61.1
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 2.2e-46 189.5 185 61.6
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 2.2e-46 189.5 185 61.6
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 2.2e-46 189.5 174 64.9
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 1.1e-45 187.2 186 59.7
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 4.1e-45 185.3 184 62.5
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 2.0e-44 183.0 174 60.9
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 2.7e-44 182.6 171 60.2
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 3.5e-44 182.2 189 58.2
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 6.0e-44 181.4 185 58.9
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 1.0e-43 180.6 177 59.9
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 1.7e-43 179.9 191 57.6
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 2.3e-43 179.5 186 60.8
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 3.0e-43 179.1 184 59.8
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 8.6e-43 177.6 171 57.9
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 2.5e-42 176.0 179 58.1
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 7.3e-42 174.5 182 57.1
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 2.1e-41 172.9 173 60.1
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 2.8e-41 172.6 172 58.7
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.1e-40 170.6 175 58.9
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 1.8e-40 169.9 183 56.8
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 1.8e-40 169.9 120 72.5
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 4.0e-40 168.7 186 55.4
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 8.9e-40 167.5 125 69.6
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 1.2e-39 167.2 186 54.8
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 2.0e-39 166.4 185 55.7
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 2.0e-39 166.4 185 55.7
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 2.6e-39 166.0 182 55.5
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 3.4e-39 165.6 182 55.5
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 3.4e-39 165.6 186 54.3
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 3.4e-39 165.6 121 72.7
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 5.8e-39 164.9 161 57.8
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 5.8e-39 164.9 173 56.1
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 7.5e-39 164.5 161 58.4
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 1.3e-38 163.7 186 54.3
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 3.7e-38 162.2 176 55.1
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 6.4e-38 161.4 187 55.1
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 1.1e-37 160.6 150 60.0
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 1.4e-37 160.2 208 50.0
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 1.4e-37 160.2 148 62.2
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 2.4e-37 159.5 151 59.6
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 2.4e-37 159.5 153 57.5
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 9.2e-37 157.5 185 53.0
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 3.5e-36 155.6 163 55.8
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 7.8e-36 154.5 121 65.3
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 7.8e-36 154.5 124 70.2
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 7.8e-36 154.5 152 59.2
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 1.3e-35 153.7 122 63.1
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 6.6e-35 151.4 180 53.3
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 5.6e-34 148.3 127 64.6
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 6.2e-33 144.8 172 50.6
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 8.9e-32 141.0 166 53.6
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 1.2e-31 140.6 157 51.0
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 1.5e-31 140.2 118 60.2
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 2.0e-31 139.8 158 53.2
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 4.4e-31 138.7 189 48.1
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 2.4e-29 132.9 148 54.1
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 5.4e-29 131.7 183 48.6
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 7.1e-29 131.3 156 53.2
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 7.1e-29 131.3 160 48.8
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 9.2e-29 131.0 125 58.4
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 2.1e-28 129.8 177 46.3
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 2.7e-28 129.4 165 50.9
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 2.7e-28 129.4 159 52.8
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 6.0e-28 128.3 104 64.4
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 1.0e-27 127.5 161 47.2
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 3.0e-27 125.9 92 71.7
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 6.6e-27 124.8 117 56.4
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 1.1e-26 124.0 154 53.2
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 1.1e-26 124.0 161 46.0
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 4.3e-26 122.1 101 62.4
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 5.6e-26 121.7 154 52.6
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 2.6e-23 112.8 95 61.1
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 4.2e-21 105.5 147 48.3
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 6.6e-19 98.2 62 74.2
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 1.1e-16 90.9 111 52.3
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 4.0e-16 89.0 100 47.0
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 9.0e-16 87.8 122 45.1
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 9.0e-16 87.8 111 45.0
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 2.6e-15 86.3 113 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 6.4e-14 81.6 113 44.2
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 2.3e-11 73.2 103 35.9
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 1.3e-09 67.4 98 39.8
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 2.8e-09 66.2 81 50.6
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 1.1e-08 64.3 81 49.4
MELO3C012839.2 Cucumis melo HOM05D000117 ORTHO05D000070 1.5e-07 60.5 100 36.0
CDE02G1313 Ceratophyllum demersum HOM05D000117 ORTHO05D000070 4.5e-07 58.9 98 31.6
CsaV3_3G028380 Cucumis sativus L. HOM05D000117 ORTHO05D000070 4.5e-07 58.9 100 36.0
Sed0010170 Sechium edule HOM05D000117 ORTHO05D000070 5.8e-07 58.5 100 34.0
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 9.9e-07 57.8 99 33.3
ECA248G2747 Erigeron canadensis HOM05D000117 ORTHO05D000070 9.9e-07 57.8 98 34.7
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 9.9e-07 57.8 98 32.7
AL1G14220 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 1.3e-06 57.4 98 32.7
arahy.Tifrunner.gnm1.ann1.AIW4ZZ Arachis hypogaea HOM05D000117 ORTHO05D000070 1.3e-06 57.4 97 36.1
arahy.Tifrunner.gnm1.ann1.F8XE83 Arachis hypogaea HOM05D000117 ORTHO05D000070 1.3e-06 57.4 97 36.1
AT1G04550 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 1.7e-06 57.0 98 32.7
PSO782G5332 Papaver somniferum HOM05D000117 ORTHO05D000070 1.7e-06 57.0 100 36.0
Sp1g03380 Schrenkiella parvula HOM05D000117 ORTHO05D000070 1.7e-06 57.0 98 33.7
Carub.0001s0376 Capsella rubella HOM05D000117 ORTHO05D000070 2.2e-06 56.6 98 32.7
Thhalv10008626m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 2.2e-06 56.6 98 32.7
Gohir.A08G190700 Gossypium hirsutum HOM05D000117 ORTHO05D000070 2.2e-06 56.6 109 33.9
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 2.9e-06 56.2 99 31.3
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 2.9e-06 56.2 99 31.3
Sed0016915 Sechium edule HOM05D000117 ORTHO05D000070 2.9e-06 56.2 106 33.0
Ciclev10005544m.g Citrus clementina HOM05D000117 ORTHO05D000070 3.8e-06 55.8 98 30.6
HanXRQChr06g0172571 Helianthus annuus HOM05D000117 ORTHO05D000070 3.8e-06 55.8 98 34.7
PSO761G0698 Papaver somniferum HOM05D000117 ORTHO05D000070 3.8e-06 55.8 99 34.3
SalBow2G0935 Salvia bowleyana HOM05D000117 ORTHO05D000070 3.8e-06 55.8 98 32.7
THA.LOC104804036 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 3.8e-06 55.8 98 33.7
PGR031G0139 Punica granatum HOM05D000117 ORTHO05D000070 4.9e-06 55.5 98 31.6
PGR031G2925 Punica granatum HOM05D000117 ORTHO05D000070 4.9e-06 55.5 98 31.6
BcaC02g11416 Brassica carinata HOM05D000117 ORTHO05D000070 6.4e-06 55.1 98 30.6
BcaNung05971 Brassica carinata HOM05D000117 ORTHO05D000070 6.4e-06 55.1 98 32.7
BcaNung06561 Brassica carinata HOM05D000117 ORTHO05D000070 6.4e-06 55.1 98 32.7
C04p15810 Brassica napus HOM05D000117 ORTHO05D000070 6.4e-06 55.1 98 30.6
Ca_09648_v3 Cicer arietinum L. HOM05D000117 ORTHO05D000070 6.4e-06 55.1 100 33.0
MBI03_g18679_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 6.4e-06 55.1 98 35.7
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 6.4e-06 55.1 98 31.6
PSO170G1783 Papaver somniferum HOM05D000117 ORTHO05D000070 6.4e-06 55.1 100 35.0
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 8.4e-06 54.7 98 32.7
BraA10t42566Z Brassica rapa HOM05D000117 ORTHO05D000070 8.4e-06 54.7 98 32.7
THA.LOC104826053 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 8.4e-06 54.7 113 31.0
TWI53G0914 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 8.4e-06 54.7 105 31.4


User provided reference genes

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