Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.8e-121 439.9 338 100.0
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.8e-90 336.3 313 85.9
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 8.1e-90 334.7 338 77.5
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 3.1e-89 332.8 338 78.7
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.5e-88 330.5 337 71.8
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 7.6e-88 328.2 339 78.8
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.9e-87 326.2 312 84.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.1e-86 324.3 340 70.9
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.2e-85 320.9 339 77.0
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 6.0e-85 318.5 338 72.8
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.7e-84 317.0 339 75.5
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 3.9e-84 315.8 338 69.5
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-83 314.3 339 75.5
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.1e-83 314.3 331 77.3
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.3e-83 312.4 337 68.5
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 9.6e-83 311.2 335 71.6
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.1e-82 310.1 318 64.5
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.8e-82 309.7 339 73.7
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.8e-82 308.9 340 75.0
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.8e-82 308.9 339 71.7
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 4.8e-82 308.9 332 70.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 4.8e-82 308.9 328 75.0
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.1e-82 308.1 326 77.9
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.1e-81 307.8 316 79.4
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.1e-81 307.8 338 68.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.4e-81 307.4 339 71.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-81 305.8 316 78.5
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-81 305.8 316 78.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 7.6e-80 301.6 318 68.2
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 9.9e-80 301.2 319 70.2
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 9.9e-80 301.2 319 63.9
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.7e-79 300.4 328 73.8
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.2e-79 300.1 328 68.3
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 6.4e-79 298.5 328 68.0
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 6.4e-79 298.5 318 70.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 1.1e-78 297.7 326 68.4
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-78 297.4 328 68.3
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.4e-78 296.6 319 75.2
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 3.2e-78 296.2 328 68.0
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-78 296.2 319 75.2
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-78 296.2 328 68.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 3.2e-78 296.2 319 75.2
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 3.2e-78 296.2 316 69.6
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.2e-78 296.2 335 69.3
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 7.1e-78 295.0 328 68.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.7e-77 293.1 326 73.3
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 4.6e-77 292.4 328 67.1
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 4.6e-77 292.4 326 72.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 4.6e-77 292.4 328 69.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 6.0e-77 292.0 318 73.0
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 7.9e-77 291.6 315 66.3
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.0e-76 291.2 335 68.7
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 1.8e-76 290.4 328 67.1
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.8e-76 290.4 324 75.6
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.3e-76 290.0 311 78.1
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 3.9e-76 289.3 312 72.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.7e-76 288.1 339 69.0
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.1e-75 287.7 335 72.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-75 287.0 319 68.3
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.9e-75 287.0 344 70.3
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.5e-75 286.6 316 76.3
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.5e-75 286.6 323 74.0
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.3e-75 286.2 328 66.8
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 4.3e-75 285.8 315 66.7
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 4.3e-75 285.8 315 66.7
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 7.4e-75 285.0 329 72.6
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 9.6e-75 284.6 327 66.7
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 3.7e-74 282.7 319 67.1
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.7e-74 282.7 318 76.1
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.7e-74 282.7 327 70.0
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.2e-74 282.0 325 59.7
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.4e-73 280.8 319 75.5
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.4e-73 280.8 326 64.4
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.1e-73 279.6 340 65.0
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.1e-73 279.6 340 65.0
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 4.0e-73 279.3 312 68.6
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 9.0e-73 278.1 357 54.3
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.5e-72 277.3 327 67.9
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.6e-72 276.6 327 68.8
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.6e-72 276.6 328 64.6
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.6e-72 276.6 333 72.1
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.4e-72 276.2 324 66.7
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 3.4e-72 276.2 333 69.1
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.8e-72 275.4 312 75.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 9.9e-72 274.6 333 68.2
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.9e-71 273.1 325 72.3
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.9e-71 273.1 327 67.9
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.4e-70 270.8 328 71.3
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.4e-70 270.8 315 76.5
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.2e-70 269.2 331 70.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 4.2e-70 269.2 312 75.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 2.1e-69 266.9 342 67.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.7e-69 266.5 318 73.6
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 6.0e-69 265.4 303 69.6
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.3e-68 263.5 323 66.3
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 8.7e-68 261.5 333 64.6
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 2.5e-67 260.0 257 69.3
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 5.6e-67 258.8 302 66.9
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 4.8e-66 255.8 310 71.6
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 5.3e-65 252.3 314 68.5
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 4.5e-64 249.2 316 70.6
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 4.5e-64 249.2 333 56.2
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.9e-63 246.5 293 69.6
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.5e-62 243.4 311 72.0
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 4.2e-62 242.7 326 67.5
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 9.3e-62 241.5 361 51.2
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.1e-61 240.4 325 64.9
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-60 237.3 237 65.0
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.3e-59 233.0 171 74.3
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.3e-59 232.6 316 58.9
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 6.3e-58 228.8 324 58.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.0e-55 221.5 336 56.0
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.7e-55 220.7 312 60.9
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 2.9e-55 219.9 236 61.9
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 4.2e-54 216.1 199 63.3
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.6e-53 214.2 296 56.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-52 209.5 238 68.9
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 5.7e-51 205.7 224 69.2
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-48 198.0 195 65.6
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-48 197.6 186 77.4
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.5e-47 192.2 194 55.2
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 8.5e-47 191.8 194 55.2
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-45 188.0 156 72.4
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.6e-45 187.6 336 48.8
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.8e-44 184.1 310 57.7
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 5.1e-44 182.6 185 68.1
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 4.8e-42 176.0 304 59.5
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.8e-42 176.0 119 76.5
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-41 173.7 185 59.5
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 3.1e-41 173.3 212 83.5
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 5.3e-41 172.6 308 60.4
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 6.9e-41 172.2 150 62.0
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.5e-38 163.7 157 63.7
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 7.2e-38 162.2 330 50.6
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 2.1e-37 160.6 172 58.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.4e-36 157.9 308 45.8
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.6e-35 153.7 207 76.3
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.3e-35 153.3 159 55.3
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.2e-34 150.6 152 61.2
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.1e-33 148.3 144 57.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-33 147.5 158 64.6
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.8e-33 147.5 337 50.7
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 4.1e-33 146.4 133 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.2e-32 144.8 315 44.4
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.7e-31 141.0 121 62.8
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.8e-31 139.8 152 53.9
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 6.5e-31 139.0 152 69.1
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 4.7e-29 132.9 175 50.9
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.0e-27 127.5 308 40.3
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.5e-24 116.7 183 71.6
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.4e-17 94.0 96 54.2
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.1e-17 93.2 93 57.0
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.1e-17 93.2 93 57.0
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.1e-17 92.0 93 57.0
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 8.6e-15 85.5 96 47.9
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-13 81.3 86 54.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 4.7e-13 79.7 147 36.7
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 8.0e-13 79.0 102 45.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 9.8e-11 72.0 46 71.7
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-10 70.5 92 46.7
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 6.3e-10 69.3 104 39.4
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.1e-09 68.6 163 55.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.1e-09 66.6 95 43.2
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.3e-07 61.6 67 50.7
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.8e-07 60.1 80 45.0


User provided reference genes

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