Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 3.1e-276 954.5 493 100.0
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 2.4e-247 858.6 494 91.1
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 3.0e-170 602.4 503 62.2
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 4.5e-166 588.6 500 62.2
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 3.8e-165 585.5 503 61.2
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 9.8e-161 570.9 504 60.5
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 2.8e-160 569.3 504 60.3
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 4.9e-160 568.5 495 62.2
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 2.0e-158 563.1 505 58.4
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 2.7e-158 562.8 501 58.9
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 7.8e-158 561.2 505 58.2
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 1.0e-157 560.8 422 66.8
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 8.6e-157 557.8 501 58.7
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 4.7e-155 552.0 502 58.6
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 3.4e-153 545.8 504 58.3
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 1.7e-152 543.5 505 57.4
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 2.0e-150 536.6 493 59.0
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 2.7e-150 536.2 500 57.4
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 1.7e-149 533.5 501 56.5
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 2.3e-149 533.1 493 57.8
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 1.9e-148 530.0 511 56.6
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 3.3e-148 529.3 508 57.3
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 5.6e-148 528.5 503 57.9
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 3.6e-147 525.8 506 54.5
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 8.9e-146 521.2 511 55.6
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 4.4e-145 518.8 497 55.9
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 8.3e-144 514.6 483 55.9
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.1e-143 514.2 498 55.8
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 4.1e-143 512.3 493 54.4
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 3.9e-141 505.8 431 61.5
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 9.5e-140 501.1 506 54.0
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 8.9e-138 494.6 502 53.4
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 3.2e-135 486.1 498 52.8
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 1.0e-133 481.1 503 53.9
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 1.3e-133 480.7 516 52.3
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 1.9e-132 476.9 501 51.7
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 3.3e-132 476.1 504 51.2
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 2.1e-131 473.4 497 53.7
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 6.2e-131 471.9 507 52.1
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 5.2e-130 468.8 499 53.1
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 2.0e-129 466.8 497 50.1
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 3.4e-129 466.1 506 51.6
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 7.6e-129 464.9 500 50.8
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 1.3e-128 464.2 474 51.3
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 2.9e-128 463.0 430 57.9
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 2.9e-128 463.0 498 51.2
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 1.6e-126 457.2 498 50.4
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 3.5e-126 456.1 506 48.0
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 1.0e-125 454.5 500 49.4
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 2.3e-125 453.4 494 51.4
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 1.1e-124 451.1 498 49.2
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 8.1e-123 444.9 496 49.6
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 3.1e-122 443.0 516 52.1
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 3.1e-122 443.0 502 50.6
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 4.0e-122 442.6 497 47.7
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 1.5e-121 440.7 502 47.4
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 2.0e-121 440.3 502 47.2
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 4.4e-121 439.1 502 47.2
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 2.2e-120 436.8 414 56.8
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 8.4e-120 434.9 502 46.6
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.6e-118 430.6 440 52.0
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 6.0e-118 428.7 413 54.5
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 7.8e-118 428.3 411 55.0
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 1.7e-117 427.2 506 46.4
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.7e-117 427.2 411 54.0
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 2.6e-113 413.3 505 47.3
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 1.9e-108 397.1 414 53.4
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 8.7e-101 371.7 419 49.9
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.9e-100 370.5 360 54.4
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 2.3e-93 347.1 408 47.5
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 6.7e-93 345.5 287 60.3
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 3.3e-92 343.2 506 41.9
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 5.5e-87 325.9 456 44.3
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 4.5e-81 306.2 543 37.9
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 4.7e-78 296.2 250 60.8
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 2.5e-71 273.9 563 34.8
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 5.9e-65 252.7 499 35.7
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 2.2e-64 250.8 501 34.7
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 6.3e-43 179.5 159 57.2
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 9.8e-36 155.6 484 28.5
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 8.9e-29 132.5 447 26.4
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 2.9e-27 127.5 115 58.3
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 3.9e-16 90.5 252 31.0
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 4.6e-09 67.0 504 24.0
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 1.6e-06 58.5 91 34.1


User provided reference genes

Program Settings