Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 2.5e-206 721.8 365 100.0
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.8e-165 585.5 368 83.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 2.5e-129 466.1 322 68.9
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 1.2e-126 457.2 332 65.7
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 9.9e-126 454.1 356 61.2
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 2.7e-123 446.0 344 64.2
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 6.6e-122 441.4 351 65.5
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 4.3e-121 438.7 276 75.0
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.1e-119 434.1 341 63.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.1e-119 434.1 341 64.2
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 5.8e-118 428.3 289 73.0
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 1.3e-117 427.2 258 76.4
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.1e-116 424.1 295 67.8
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-116 424.1 295 67.8
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 3.2e-116 422.5 305 70.8
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 9.3e-116 421.0 256 75.0
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 2.1e-115 419.9 302 65.9
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 2.1e-115 419.9 304 67.8
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 4.6e-115 418.7 304 67.8
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 1.3e-114 417.2 293 67.6
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 3.0e-114 416.0 340 62.4
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.1e-113 414.1 321 64.2
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.5e-113 413.7 335 64.5
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 3.3e-113 412.5 294 69.0
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 4.3e-113 412.1 300 68.0
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 9.6e-113 411.0 306 67.3
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.1e-112 409.8 295 68.8
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 3.6e-112 409.1 299 64.9
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 4.8e-112 408.7 258 74.8
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 8.1e-112 407.9 304 67.4
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.5e-110 403.7 326 61.3
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 3.4e-110 402.5 258 71.3
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 4.5e-110 402.1 323 65.6
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 5.8e-110 401.7 295 69.2
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 2.2e-109 399.8 295 68.5
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 3.8e-109 399.1 328 60.4
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 8.4e-109 397.9 302 65.2
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.1e-108 397.5 272 70.6
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 2.7e-107 392.9 317 65.0
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 1.0e-106 391.0 300 65.7
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.3e-106 389.8 317 64.7
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.3e-106 389.8 321 58.9
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 6.7e-106 388.3 334 61.4
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.1e-105 387.5 298 65.8
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 5.6e-105 385.2 300 65.3
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 7.4e-105 384.8 321 57.9
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 5.3e-103 378.6 284 66.9
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.6e-102 376.3 258 69.8
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 1.3e-101 374.0 303 63.7
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 2.9e-101 372.9 292 57.9
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 3.8e-101 372.5 240 75.0
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 7.1e-100 368.2 251 66.1
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 8.7e-98 361.3 241 71.0
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.1e-97 360.9 238 69.7
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 9.6e-97 357.8 298 59.4
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 1.4e-95 354.0 240 71.2
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.8e-95 353.6 255 63.1
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.5e-94 350.5 211 77.7
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.6e-94 349.7 310 61.6
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 7.6e-94 348.2 320 60.9
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 1.0e-93 347.8 311 62.1
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.7e-93 347.1 320 60.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 2.2e-93 346.7 320 58.8
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 8.4e-93 344.7 320 60.3
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.1e-92 344.4 320 60.3
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 3.2e-92 342.8 258 67.1
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.6e-91 340.5 296 62.5
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 7.9e-91 338.2 322 57.5
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.3e-90 337.4 304 54.9
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 2.3e-90 336.7 350 56.3
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.9e-90 335.9 212 75.5
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 1.5e-89 334.0 297 59.9
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.6e-88 330.5 296 56.1
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 6.9e-87 325.1 244 61.9
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 2.0e-86 323.6 205 74.1
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 2.3e-82 310.1 235 66.8
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 6.7e-82 308.5 257 63.0
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 1.1e-81 307.8 252 57.9
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 5.7e-81 305.4 206 73.8
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 9.7e-81 304.7 240 64.2
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 3.1e-79 299.7 338 53.8
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 1.5e-78 297.4 278 57.9
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 3.2e-76 289.7 174 73.0
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 4.7e-75 285.8 206 67.5
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.5e-73 280.8 241 63.1
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 1.5e-73 280.8 329 47.4
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 1.3e-72 277.7 236 62.3
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 1.4e-71 274.2 254 60.2
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 3.1e-71 273.1 347 46.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.7e-69 267.3 283 48.1
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 3.8e-69 266.2 302 51.3
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 7.2e-68 261.9 322 45.0
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 9.4e-68 261.5 249 53.0
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 6.1e-67 258.8 336 44.6
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 1.8e-66 257.3 225 58.2
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 3.2e-60 236.5 231 55.0
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.2e-60 236.1 191 60.7
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 4.2e-60 236.1 255 51.8
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 9.4e-60 235.0 346 43.9
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 1.2e-59 234.6 230 54.3
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 4.7e-59 232.6 195 63.1
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.8e-58 230.7 167 69.5
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 4.4e-57 226.1 239 53.6
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 4.5e-54 216.1 147 72.1
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 7.2e-52 208.8 158 65.8
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.8e-50 204.1 124 73.4
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 1.2e-49 201.4 286 42.3
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.1e-47 194.9 324 36.7
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.9e-45 186.8 153 61.4
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 8.6e-45 185.3 238 45.8
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 5.2e-42 176.0 182 53.3
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 6.8e-42 175.6 275 40.7
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 3.9e-37 159.8 318 33.6
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 1.5e-36 157.9 126 64.3
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 1.4e-34 151.4 275 37.5
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 1.7e-32 144.4 280 34.3
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 9.2e-31 138.7 105 65.7
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.6e-30 136.3 110 60.9
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 4.6e-30 136.3 121 61.2
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 2.3e-29 134.0 91 68.1
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.9e-28 131.0 91 67.0
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 1.9e-28 131.0 91 67.0
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 9.8e-25 118.6 101 55.4
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.6e-22 111.3 97 58.8
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 5.6e-20 102.8 61 78.7
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.4e-18 98.2 221 33.5
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 5.2e-18 96.3 73 67.1
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 1.7e-16 91.3 158 35.4
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 8.4e-16 89.0 113 47.8
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 9.2e-15 85.5 72 55.6
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.6e-14 83.2 68 60.3
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 5.6e-12 76.3 63 58.7
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.5e-09 68.2 55 58.2
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 6.4e-08 62.8 51 56.9


User provided reference genes

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