Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.7e-72 275.4 158 100.0
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.3e-42 176.8 196 61.2
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.1e-28 128.6 161 60.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.1e-28 128.6 161 60.2
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.3e-26 123.6 155 60.6
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.6e-24 116.7 154 59.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.1e-24 116.3 111 74.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 5.8e-22 108.2 105 72.4
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 7.5e-22 107.8 113 68.1
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.7e-21 106.7 131 58.8
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 8.3e-21 104.4 98 54.1
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.9e-20 103.2 131 55.0
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.4e-20 101.7 111 52.3
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.7e-18 96.7 135 44.4
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.5e-17 93.6 124 58.9
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 4.3e-17 92.0 111 62.2
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.6e-17 91.7 133 42.9
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 9.5e-17 90.9 121 56.2
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.8e-16 89.4 147 41.5
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.7e-16 88.6 132 41.7
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-15 87.4 133 42.1
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-15 87.0 128 42.2
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.8e-15 86.7 92 67.4
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.1e-15 85.9 124 58.1
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.1e-15 85.9 133 41.4
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 4.0e-15 85.5 101 61.4
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 8.9e-15 84.3 165 34.5
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 8.9e-15 84.3 98 60.2
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.4e-14 82.0 211 33.6
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-13 80.5 163 31.9
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-13 80.5 159 42.1
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-13 80.5 163 31.9
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.7e-13 80.1 118 41.5
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 3.7e-13 79.0 158 34.2
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 6.4e-13 78.2 75 76.0
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 8.3e-13 77.8 97 62.9
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 1.1e-12 77.4 163 39.9
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.1e-12 77.4 79 70.9
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 1.4e-12 77.0 116 56.0
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.4e-12 77.0 86 73.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.4e-12 77.0 85 69.4
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.1e-12 75.5 70 80.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 5.4e-12 75.1 86 67.4
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 7.1e-12 74.7 80 73.8
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.1e-12 74.7 137 40.9
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 9.2e-12 74.3 104 43.3
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.2e-12 74.3 76 76.3
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.2e-11 73.9 219 33.8
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.2e-11 73.9 127 39.4
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 1.2e-11 73.9 83 72.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.2e-11 73.9 77 51.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.6e-11 73.6 89 67.4
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 2.1e-11 73.2 181 38.1
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 2.1e-11 73.2 80 70.0
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.1e-11 73.2 79 70.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 2.1e-11 73.2 87 65.5
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.7e-11 72.8 79 70.9
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 3.5e-11 72.4 97 59.8
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.5e-11 72.4 86 58.1
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.6e-11 72.0 88 63.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.6e-11 72.0 95 64.2
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 4.6e-11 72.0 85 65.9
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.6e-11 72.0 117 52.1
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.0e-11 71.6 82 72.0
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 7.8e-11 71.2 163 38.7
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 7.8e-11 71.2 163 38.7
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 7.8e-11 71.2 119 39.5
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.8e-11 71.2 119 39.5
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 1.0e-10 70.9 163 38.7
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 1.0e-10 70.9 101 58.4
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 1.3e-10 70.5 164 33.5
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.3e-10 70.5 101 56.4
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.7e-10 70.1 85 62.4
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 2.3e-10 69.7 45 82.2
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.3e-10 69.7 87 62.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.0e-10 69.3 82 65.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 3.0e-10 69.3 81 64.2
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.0e-10 69.3 101 60.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 3.9e-10 68.9 83 63.9
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.9e-10 68.9 86 60.5
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 3.9e-10 68.9 126 46.8
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 3.9e-10 68.9 75 76.0
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 5.1e-10 68.6 166 32.5
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 5.1e-10 68.6 99 58.6
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 5.1e-10 68.6 86 62.8
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 6.6e-10 68.2 96 62.5
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 6.6e-10 68.2 85 64.7
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 8.6e-10 67.8 166 32.5
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 8.6e-10 67.8 166 32.5
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.1e-09 67.4 101 44.6
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-09 67.0 169 31.4
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.5e-09 67.0 77 48.1
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.9e-09 66.6 92 59.8
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.9e-09 66.6 100 58.0
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 2.5e-09 66.2 171 31.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 2.5e-09 66.2 91 59.3
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.5e-09 66.2 75 74.7
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 4.3e-09 65.5 84 63.1
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.3e-09 65.5 181 29.8
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 4.3e-09 65.5 93 59.1
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.3e-09 65.5 96 53.1
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 5.6e-09 65.1 170 30.6
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 5.6e-09 65.1 102 41.2
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 5.6e-09 65.1 76 64.5
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 7.3e-09 64.7 87 59.8
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 7.3e-09 64.7 78 67.9
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 7.3e-09 64.7 76 68.4
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 1.2e-08 63.9 146 35.6
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.2e-08 63.9 146 35.6
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.6e-08 63.5 46 60.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.6e-08 63.5 69 49.3
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.6e-08 63.5 52 63.5
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.6e-08 63.5 77 67.5
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.6e-08 63.5 136 35.3
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.6e-08 63.5 74 64.9
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.6e-08 63.5 75 62.7
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.1e-08 63.2 98 38.8
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.1e-08 63.2 85 57.6
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.1e-08 63.2 194 28.4
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.1e-08 63.2 86 60.5
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 2.8e-08 62.8 89 56.2
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.8e-08 62.8 56 58.9
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 2.8e-08 62.8 52 63.5
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 3.6e-08 62.4 57 56.1
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 3.6e-08 62.4 57 56.1
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 3.6e-08 62.4 93 60.2
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.6e-08 62.4 93 63.4
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.7e-08 62.0 178 36.0
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 4.7e-08 62.0 75 50.7
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 4.7e-08 62.0 46 60.9
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.7e-08 62.0 105 53.3
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 6.2e-08 61.6 89 61.8
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 6.2e-08 61.6 166 31.9
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 6.2e-08 61.6 166 31.9
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 8.1e-08 61.2 132 36.4
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 8.1e-08 61.2 98 60.2
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.1e-07 60.8 94 41.5
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.1e-07 60.8 76 72.4
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.4e-07 60.5 161 41.6
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.4e-07 60.5 60 48.3
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.8e-07 60.1 47 66.0
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.8e-07 60.1 49 63.3
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.8e-07 60.1 90 37.8
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.8e-07 60.1 78 61.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.3e-07 59.7 47 59.6
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.3e-07 59.7 65 49.2
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.3e-07 59.7 82 53.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 2.3e-07 59.7 129 34.1
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.3e-07 59.7 71 47.9
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.1e-07 59.3 95 55.8
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.0e-07 58.9 128 32.8
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 4.0e-07 58.9 66 43.9
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 4.0e-07 58.9 101 49.5
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 5.2e-07 58.5 81 59.3
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 8.9e-07 57.8 46 54.3
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 8.9e-07 57.8 86 55.8
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.5e-06 57.0 56 53.6
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.6e-06 56.2 183 27.3
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 2.6e-06 56.2 57 49.1
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.4e-06 55.8 42 64.3
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.4e-06 55.8 50 50.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 3.4e-06 55.8 63 44.4
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 5.8e-06 55.1 97 54.6
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 7.6e-06 54.7 57 57.9


User provided reference genes

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