Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 4.8e-128 461.1 217 100.0
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 4.5e-102 374.8 185 94.6
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 8.3e-96 354.0 183 88.5
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 5.4e-95 351.3 185 86.5
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.6e-94 349.7 183 85.2
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.6e-94 349.7 183 85.2
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.6e-94 349.7 185 85.4
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 4.5e-94 348.2 185 85.4
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 2.3e-93 345.9 185 82.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 4.7e-91 338.2 183 83.1
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 4.7e-91 338.2 183 80.9
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 8.0e-91 337.4 182 81.3
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.0e-90 337.0 183 79.8
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.3e-90 335.9 183 81.4
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 3.0e-90 335.5 183 80.9
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 6.8e-90 334.3 182 81.9
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 8.9e-90 334.0 183 81.4
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 3.4e-89 332.0 185 80.0
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 3.4e-89 332.0 185 80.0
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.7e-88 329.7 183 78.7
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 2.2e-88 329.3 183 79.2
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.2e-88 329.3 183 79.2
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 4.9e-88 328.2 199 76.9
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.1e-87 327.0 186 79.0
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 2.4e-87 325.9 183 80.3
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 3.2e-87 325.5 183 80.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 4.1e-87 325.1 183 80.3
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 7.0e-87 324.3 192 75.5
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 7.0e-87 324.3 183 78.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 1.2e-86 323.6 184 78.8
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.7e-86 322.4 183 78.1
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-86 322.0 184 78.8
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 5.9e-86 321.2 176 80.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.8e-86 320.9 186 76.3
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.0e-85 320.5 182 79.1
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.7e-85 319.7 202 74.8
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.7e-85 319.7 183 76.5
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.7e-85 319.7 178 80.9
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-85 319.3 184 78.3
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.0e-85 318.9 184 78.3
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 3.0e-85 318.9 182 79.1
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.0e-85 318.2 179 81.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.0e-85 318.2 179 81.0
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.6e-85 317.8 183 78.1
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.6e-85 317.8 186 77.4
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.6e-85 317.8 186 77.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 8.6e-85 317.4 184 79.3
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-84 317.0 184 77.2
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.1e-84 317.0 182 76.9
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.1e-84 317.0 181 79.0
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.9e-84 316.2 189 74.1
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-84 315.5 216 67.1
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 4.3e-84 315.1 183 75.4
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 5.6e-84 314.7 182 76.4
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 5.6e-84 314.7 179 79.3
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 7.3e-84 314.3 186 76.9
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 7.3e-84 314.3 177 78.5
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.5e-84 313.9 189 74.6
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 9.5e-84 313.9 181 76.8
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.6e-83 313.2 183 76.0
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.8e-83 312.4 183 76.5
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 6.2e-83 311.2 183 74.3
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 6.2e-83 311.2 154 92.9
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.0e-83 310.8 184 75.5
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.4e-82 310.1 179 74.9
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.4e-82 310.1 176 76.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.4e-82 310.1 176 76.1
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.8e-82 309.7 179 78.8
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 2.3e-82 309.3 179 74.9
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.1e-82 308.9 183 73.8
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.1e-82 308.9 183 73.8
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 4.0e-82 308.5 179 74.3
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.0e-82 308.5 176 75.6
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 4.0e-82 308.5 186 76.3
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 5.2e-82 308.1 206 68.4
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 8.9e-82 307.4 179 73.7
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 8.9e-82 307.4 175 77.7
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.2e-81 307.0 178 74.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.5e-81 306.6 192 71.9
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 2.0e-81 306.2 179 73.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 2.6e-81 305.8 179 73.7
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 2.6e-81 305.8 179 73.2
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.4e-81 305.4 210 67.1
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 5.8e-81 304.7 182 73.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 9.8e-81 303.9 197 71.1
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.3e-80 303.5 179 73.2
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.3e-80 303.5 177 77.4
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.7e-80 303.1 215 66.0
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.2e-80 302.8 179 73.2
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 2.2e-80 302.8 176 72.7
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.2e-80 302.8 181 74.0
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.7e-78 295.8 187 70.6
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.7e-78 295.8 168 77.4
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.6e-78 295.0 258 56.2
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.0e-78 294.7 258 55.8
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 5.6e-76 288.1 158 81.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-75 287.0 163 79.8
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.8e-75 285.8 154 80.5
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.2e-75 284.6 180 70.0
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 4.4e-73 278.5 179 68.2
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 1.7e-72 276.6 183 67.2
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.7e-72 276.6 175 72.6
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 4.9e-72 275.0 181 71.3
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.4e-71 273.5 151 80.1
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.4e-71 272.7 181 71.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.4e-71 272.7 175 69.1
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.4e-71 272.7 175 69.1
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.1e-70 269.6 155 76.1
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 2.1e-70 269.6 198 63.6
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 4.6e-70 268.5 171 71.9
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 6.0e-70 268.1 210 60.0
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 3.6e-67 258.8 149 73.2
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 3.6e-67 258.8 149 74.5
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 4.0e-66 255.4 183 63.9
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.0e-65 253.1 289 47.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.2e-63 245.7 146 72.6
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 9.2e-63 244.2 138 75.4
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 8.6e-61 237.7 182 57.1
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 7.3e-60 234.6 176 61.9
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 6.4e-56 221.5 184 52.7
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.4e-55 219.5 179 57.0
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 3.2e-55 219.2 194 58.8
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.7e-53 213.4 119 79.8
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 5.1e-53 211.8 182 52.7
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.3e-51 207.2 182 56.6
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 2.9e-48 196.1 203 51.2
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 8.7e-45 184.5 205 42.4
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.3e-44 182.6 184 54.3
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 7.4e-44 181.4 172 44.2
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 7.4e-44 181.4 172 44.2
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 6.2e-43 178.3 120 65.0
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.4e-42 176.4 91 83.5
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.4e-39 166.4 208 39.4
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.2e-39 166.0 142 57.0
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.6e-38 163.7 178 40.4
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-38 163.3 89 78.7
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.0e-37 161.0 163 47.2
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 8.7e-37 157.9 181 38.7
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-34 149.4 147 53.1
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 3.4e-33 146.0 142 43.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.0e-32 144.4 93 65.6
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.1e-28 131.0 93 61.3
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 2.0e-12 77.0 46 71.7
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.4e-10 70.9 44 72.7
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 3.4e-09 66.2 43 72.1
Actinidia38479 Actinidia chinensis HOM05D002335 ORTHO05D006692 9.4e-07 58.2 42 71.4


User provided reference genes

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