Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.0e-95 350.5 214 100.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 4.5e-70 268.5 212 73.1
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 8.8e-58 227.6 211 62.1
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.2e-57 227.3 126 82.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.5e-57 226.9 126 81.7
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.6e-57 226.1 230 57.8
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 5.4e-55 218.4 124 82.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.5e-52 209.5 121 81.8
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.5e-52 209.5 121 81.8
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.5e-52 209.5 119 79.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.2e-51 207.2 129 74.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.7e-51 206.1 126 77.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.7e-51 206.1 124 79.8
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 6.1e-51 204.9 126 77.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.0e-50 204.1 129 74.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 4.0e-50 202.2 126 76.2
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 3.4e-49 199.1 126 74.6
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.7e-48 195.7 125 76.8
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.9e-48 195.3 127 77.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.9e-48 195.3 208 56.2
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 6.3e-48 194.9 124 75.0
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.4e-47 193.0 215 61.4
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.4e-47 193.0 130 69.2
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-47 192.6 122 76.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 3.1e-47 192.6 99 92.9
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.4e-47 191.8 121 77.7
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.2e-47 191.0 110 75.5
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 9.2e-47 191.0 126 73.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.5e-46 188.7 207 57.0
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.3e-45 187.2 208 63.9
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.7e-45 186.8 107 80.4
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.8e-45 185.7 121 73.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.8e-45 185.7 133 69.9
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.1e-44 184.1 120 73.3
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.9e-44 183.3 115 75.7
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.5e-44 183.0 124 71.0
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.3e-44 182.6 112 73.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 5.6e-44 181.8 212 50.5
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.6e-44 181.8 129 70.5
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-43 180.6 115 71.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.0e-42 177.6 125 68.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.0e-42 177.6 122 70.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.8e-42 176.8 126 71.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 3.0e-42 176.0 124 66.9
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.0e-42 175.6 120 69.2
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.0e-42 175.6 120 69.2
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 6.8e-42 174.9 127 68.5
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-41 174.1 225 53.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-41 173.7 126 68.3
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.6e-41 172.9 128 64.8
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 5.7e-41 171.8 219 53.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 7.5e-41 171.4 111 73.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 9.8e-41 171.0 121 67.8
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 9.8e-41 171.0 121 67.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.8e-41 171.0 126 66.7
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.8e-41 171.0 126 66.7
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-40 170.2 120 70.8
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.7e-40 170.2 120 70.8
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.7e-40 170.2 126 64.3
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.2e-40 169.9 128 64.8
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 3.7e-40 169.1 121 66.9
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 6.4e-40 168.3 119 68.1
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-39 167.5 214 53.7
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.8e-39 166.8 129 64.3
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.4e-39 166.4 111 72.1
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 7.0e-39 164.9 116 69.8
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 7.0e-39 164.9 116 69.8
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.7e-38 162.9 225 49.8
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.6e-38 162.2 100 76.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 7.8e-38 161.4 114 73.7
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 7.8e-38 161.4 105 75.2
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.3e-37 160.6 90 76.7
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-37 160.6 239 45.6
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 3.0e-37 159.5 215 50.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 5.0e-37 158.7 215 53.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-36 157.5 114 67.5
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.3e-36 156.0 105 73.3
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 4.3e-36 155.6 123 64.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 4.3e-36 155.6 96 74.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.6e-36 155.2 97 75.3
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 7.3e-36 154.8 109 71.6
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 7.3e-36 154.8 122 63.1
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-35 154.1 107 71.0
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-35 154.1 98 74.5
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-35 153.3 100 70.0
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 3.6e-35 152.5 105 69.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 4.7e-35 152.1 98 72.4
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 6.2e-35 151.8 120 63.3
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.8e-34 150.2 118 61.0
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.8e-34 150.2 93 75.3
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.3e-34 149.8 91 76.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 4.0e-34 149.1 205 49.3
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.7e-32 143.7 85 78.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 2.9e-32 142.9 89 74.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 3.7e-32 142.5 80 87.5
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 6.4e-32 141.7 77 87.0
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.0e-30 136.7 129 57.4
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 6.0e-30 135.2 122 60.7
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.3e-29 134.0 82 80.5
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-29 132.5 92 69.6
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 8.6e-29 131.3 92 68.5
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.5e-28 129.8 76 81.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 3.3e-28 129.4 196 40.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 9.5e-28 127.9 205 49.8
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.6e-27 127.1 118 55.1
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.2e-27 125.2 118 56.8
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.0e-26 122.5 83 73.5
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.6e-25 119.8 77 76.6
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 7.5e-25 118.2 65 80.0
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 4.1e-23 112.5 102 63.7
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 4.1e-23 112.5 80 66.2
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 5.4e-23 112.1 65 81.5
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 7.1e-23 111.7 62 82.3
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 7.1e-23 111.7 107 52.3
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.6e-22 110.5 102 55.9
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.5e-22 109.4 103 54.4
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.5e-22 109.4 103 54.4
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-22 109.4 72 73.6
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.3e-21 107.5 99 54.5
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.3e-21 106.7 144 45.1
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.0e-21 106.3 92 55.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.9e-21 105.9 85 54.1
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.1e-20 104.4 195 35.9
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.5e-20 104.0 66 78.8
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.9e-20 103.6 89 64.0
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.9e-20 103.6 86 59.3
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.5e-20 103.2 68 75.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 5.6e-20 102.1 67 70.1
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.2e-19 100.9 115 49.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.7e-19 99.0 65 80.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.1e-18 97.8 208 39.9
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 6.8e-18 95.1 91 50.5
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.4e-17 92.4 121 47.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 5.8e-17 92.0 73 68.5
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.7e-16 90.5 75 65.3
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.4e-15 86.7 47 89.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 4.1e-15 85.9 112 45.5
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.4e-15 85.5 76 60.5
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 7.1e-15 85.1 52 82.7
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 9.2e-15 84.7 210 35.2
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.2e-14 84.3 100 45.0
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.7e-14 83.2 50 84.0
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.7e-14 83.2 72 51.4
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.7e-14 83.2 67 59.7
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.5e-14 82.8 123 45.5
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 7.8e-14 81.6 78 55.1
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 7.8e-14 81.6 67 67.2
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.0e-13 81.3 48 85.4
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.7e-13 80.5 174 36.2
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.7e-13 80.5 61 62.3
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.7e-13 80.5 50 78.0
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 5.1e-13 79.0 122 41.8
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 6.6e-13 78.6 44 86.4
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.5e-12 77.4 55 72.7
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.5e-12 76.6 47 83.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 4.3e-12 75.9 219 32.9
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 7.3e-12 75.1 76 55.3
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 9.6e-12 74.7 42 83.3
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 9.6e-12 74.7 122 41.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.2e-11 74.3 68 60.3
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.2e-11 74.3 46 78.3
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.6e-11 73.9 50 66.0
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.1e-11 73.6 126 38.9
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.8e-11 73.2 50 74.0
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.0e-10 69.3 58 65.5
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.0e-10 69.3 98 39.8
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 5.2e-10 68.9 45 77.8
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-09 67.0 44 77.3
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.4e-09 65.9 58 62.1
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 2.9e-08 63.2 45 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 4.2e-07 59.3 65 40.0
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 4.2e-07 59.3 47 55.3
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.4e-07 58.9 37 75.7
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 7.1e-07 58.5 71 45.1
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 7.1e-07 58.5 55 50.9
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 9.3e-07 58.2 27 100.0
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 2.7e-06 56.6 59 47.5
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 3.5e-06 56.2 55 50.9


User provided reference genes

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