Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.1e-173 613.2 314 100.0
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 3.2e-157 558.5 314 92.7
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 8.5e-118 427.6 321 70.7
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.9e-111 404.8 315 68.3
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 4.2e-109 398.7 316 69.6
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 5.5e-109 398.3 317 69.1
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 7.2e-109 397.9 314 67.2
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 2.1e-108 396.4 318 66.7
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 3.6e-108 395.6 316 67.1
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.4e-107 393.7 321 66.4
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.2e-106 390.6 315 67.3
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.2e-105 386.3 319 66.8
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.1e-104 384.0 316 67.4
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.4e-104 382.9 319 65.5
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 7.7e-103 377.9 312 65.1
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 3.8e-102 375.6 312 65.7
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 6.6e-102 374.8 313 65.5
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 8.6e-102 374.4 312 65.1
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 8.6e-102 374.4 219 81.7
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.5e-101 373.6 316 66.1
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 5.6e-101 371.7 316 64.9
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.1e-100 369.8 315 65.7
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.8e-100 369.4 315 64.4
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 2.8e-100 369.4 316 63.9
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 4.7e-100 368.6 312 65.7
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 6.1e-100 368.2 314 65.0
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.1e-100 368.2 315 64.1
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 8.0e-100 367.9 316 63.6
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 8.0e-100 367.9 316 64.2
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.0e-99 367.5 312 62.8
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.0e-99 367.5 279 68.1
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.8e-99 366.7 315 64.8
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.8e-99 366.7 315 64.8
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.8e-99 366.7 324 63.6
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.8e-99 366.7 316 63.9
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 4.0e-99 365.5 316 63.9
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 8.9e-99 364.4 313 63.6
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 8.9e-99 364.4 318 61.3
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.5e-98 363.6 322 62.1
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.0e-98 363.2 316 62.0
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 2.0e-98 363.2 320 63.4
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.6e-98 362.8 313 63.3
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 5.7e-98 361.7 308 64.0
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 5.7e-98 361.7 204 85.3
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 7.5e-98 361.3 314 63.7
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.3e-97 360.5 314 62.4
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.2e-97 359.8 289 66.4
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 2.9e-97 359.4 264 68.6
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 3.7e-97 359.0 221 77.4
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 4.9e-97 358.6 312 62.5
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 6.4e-97 358.2 315 63.5
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 6.4e-97 358.2 265 69.1
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.1e-96 357.5 316 60.8
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.1e-96 357.5 313 60.4
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.8e-96 356.7 310 63.2
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.4e-96 356.3 314 60.5
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 2.4e-96 356.3 225 75.6
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 4.1e-96 355.5 220 77.3
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 7.0e-96 354.8 315 60.3
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 9.2e-96 354.4 314 61.5
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 9.2e-96 354.4 228 73.7
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 9.2e-96 354.4 317 59.3
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.2e-95 354.0 287 64.8
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.6e-95 353.6 313 62.0
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.6e-95 353.6 317 61.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 3.5e-95 352.4 239 69.9
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 7.8e-95 351.3 315 61.0
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-94 350.9 315 62.9
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.7e-94 350.1 321 61.4
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.3e-94 349.7 233 73.8
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 3.0e-94 349.4 318 61.3
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.6e-94 348.2 320 60.0
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 6.6e-94 348.2 317 61.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.1e-93 347.4 318 59.4
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.1e-93 347.4 279 62.0
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.5e-93 347.1 316 61.7
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 3.3e-93 345.9 319 60.2
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 3.3e-93 345.9 314 59.6
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 4.3e-93 345.5 315 61.9
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.6e-93 345.1 321 57.6
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 5.6e-93 345.1 336 57.1
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 4.7e-92 342.0 313 61.3
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.0e-91 340.9 265 64.9
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.0e-91 340.9 218 76.1
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 1.8e-91 340.1 313 61.0
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 5.2e-91 338.6 314 58.6
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 8.9e-91 337.8 342 56.4
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 9.8e-90 334.3 245 68.2
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 9.8e-90 334.3 225 70.7
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 1.7e-89 333.6 217 74.7
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.2e-89 333.2 316 58.9
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 8.3e-89 331.3 225 69.8
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 2.4e-88 329.7 299 59.5
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.4e-88 329.7 247 68.4
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 4.1e-88 328.9 340 56.8
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 3.5e-87 325.9 211 73.5
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 6.0e-87 325.1 292 58.6
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.0e-86 324.3 324 57.7
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 3.9e-86 322.4 266 61.3
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 4.3e-85 318.9 302 59.6
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.6e-84 317.0 263 63.9
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 8.1e-84 314.7 287 61.0
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 5.2e-83 312.0 308 59.4
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 5.2e-83 312.0 327 53.2
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.2e-82 310.8 198 73.7
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 2.6e-82 309.7 247 66.8
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 7.5e-82 308.1 250 60.0
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.2e-81 306.6 304 57.9
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 6.4e-81 305.1 263 59.7
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 6.8e-75 285.0 335 53.1
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 6.8e-75 285.0 241 58.5
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 3.5e-71 272.7 277 54.9
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 3.9e-70 269.2 261 59.0
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 7.3e-69 265.0 212 57.1
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 4.0e-67 259.2 201 63.2
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 2.1e-63 246.9 240 51.7
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 2.5e-61 240.0 187 65.8
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 1.3e-60 237.7 235 50.2
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 2.8e-60 236.5 191 64.4
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 3.8e-49 199.5 184 55.4
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 7.9e-47 191.8 144 66.7
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.0e-43 179.5 109 75.2
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.8e-38 164.1 161 49.7
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.3e-38 163.7 266 42.1
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 1.7e-33 147.5 83 81.9
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-33 147.1 83 83.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 4.2e-32 142.9 203 36.9
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-31 141.0 142 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.8e-28 129.4 125 51.2
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 8.2e-28 128.6 68 86.8
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 3.1e-27 126.7 150 40.0
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 9.0e-27 125.2 77 76.6
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 4.6e-23 112.8 199 31.7
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 2.2e-17 94.0 146 44.5
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 8.5e-17 92.0 113 46.9
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 5.2e-14 82.8 102 50.0
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 5.3e-11 72.8 83 49.4
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.2e-09 67.4 37 86.5
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 6.5e-09 65.9 140 37.1
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.5e-08 63.9 35 85.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.2e-08 63.5 31 87.1
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.2e-08 63.5 96 45.8
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 1.6e-07 61.2 76 48.7
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 3.0e-06 57.0 28 85.7


User provided reference genes

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