Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1546.9 750 100.0
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1403.3 750 91.2
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1402.9 750 91.2
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1310.0 752 85.0
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1288.9 751 83.2
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1263.1 750 82.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1256.9 750 81.6
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1249.6 751 81.5
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1241.9 752 81.4
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1238.0 748 80.9
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1235.3 751 81.4
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1234.9 756 81.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1233.4 751 81.0
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1222.6 751 80.3
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1221.8 751 80.4
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1211.4 763 78.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1199.9 750 79.1
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1195.3 751 78.2
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1192.2 752 79.3
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1191.4 751 78.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1190.6 776 76.4
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1186.8 776 75.8
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1183.3 751 78.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1180.6 749 78.0
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1172.1 774 75.1
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1164.4 754 78.1
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1159.8 681 85.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1147.5 750 76.4
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1146.3 787 73.8
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1141.7 777 73.4
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1139.8 755 74.2
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1132.1 751 76.3
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 721 77.8
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 777 72.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1107.4 771 71.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1107.0 754 72.5
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1105.9 755 73.2
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1105.1 777 72.6
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1105.1 756 72.9
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1103.6 755 72.8
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1103.6 773 71.5
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 774 71.3
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1102.8 777 72.5
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1102.8 756 72.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1101.7 745 73.0
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 774 70.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 769 71.9
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1096.3 767 70.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1095.1 775 70.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 771 70.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 767 70.5
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1092.4 769 69.8
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1092.4 771 70.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 769 69.8
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 750 72.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 751 72.7
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 797 68.6
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 770 71.2
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 770 70.1
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 749 70.4
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 0.0e+00 1081.6 749 70.0
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 761 70.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1079.3 783 69.3
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 0.0e+00 1077.0 748 70.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1075.8 773 69.0
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1075.8 756 71.2
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 5.1e-312 1074.3 773 69.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 5.1e-312 1073.9 750 70.0
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.0e-311 1072.8 748 70.1
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 2.3e-310 1068.5 774 68.9
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 3.9e-310 1067.8 749 69.4
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.6e-308 1062.4 774 68.7
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 6.2e-308 1060.4 758 69.8
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 8.1e-308 1060.1 774 69.0
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.4e-307 1058.5 751 69.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.1e-307 1058.1 774 68.7
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 5.2e-307 1057.4 751 68.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 5.2e-307 1057.4 751 72.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 8.9e-307 1056.6 752 68.9
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.2e-306 1056.2 774 68.6
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-306 1056.2 774 68.6
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.6e-306 1055.0 767 69.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.6e-306 1055.0 769 69.6
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 753 68.5
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.9e-305 1050.8 774 68.0
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 7.1e-304 1047.0 771 68.1
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 9.3e-304 1046.6 834 66.3
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 6.6e-302 1040.4 755 68.2
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 8.1e-300 1033.5 769 67.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 6.9e-299 1030.4 777 66.3
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.4e-296 1022.7 767 66.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.1e-293 1013.1 792 66.5
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 9.6e-293 1010.0 740 69.1
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.1e-292 1008.8 774 65.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.8e-292 1007.7 774 65.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 4.0e-291 1004.6 770 65.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.3e-289 999.6 764 66.9
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.4e-288 995.3 767 64.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.2e-287 993.0 773 64.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 6.0e-287 990.7 775 64.4
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 7.9e-287 990.3 775 64.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.0e-286 989.9 813 62.2
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.3e-286 989.6 775 64.1
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.8e-286 989.2 775 64.1
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 3.0e-286 988.4 765 67.1
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-285 986.5 759 67.3
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.3e-285 984.6 770 65.3
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-284 983.0 777 63.6
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.7e-284 981.5 765 65.2
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 4.8e-284 981.1 806 62.9
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.6e-282 975.3 773 64.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.0e-281 973.4 772 62.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 4.2e-280 968.0 774 62.3
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 5.5e-280 967.6 779 62.4
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 7.1e-280 967.2 775 63.0
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.2e-279 966.5 780 63.2
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 4.6e-279 964.5 764 63.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.3e-278 963.0 773 63.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.3e-278 962.2 776 63.7
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.6e-276 956.1 772 63.1
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.5e-274 948.0 776 63.1
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.2e-273 945.7 768 62.5
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.6e-271 937.9 754 63.4
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.3e-270 935.6 778 62.1
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 3.7e-268 928.3 756 64.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-267 926.8 755 64.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.6e-266 922.2 768 61.8
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-264 915.6 753 60.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 4.2e-264 914.8 708 67.7
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 3.7e-260 901.7 770 59.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 5.5e-256 887.9 719 65.5
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 5.5e-256 887.9 768 59.5
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 9.4e-256 887.1 771 60.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.6e-255 886.3 765 59.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.8e-249 865.1 755 58.9
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.5e-248 862.4 762 60.0
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 6.1e-247 857.8 664 66.0
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.8e-219 766.5 738 55.1
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 5.6e-192 675.2 759 47.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 6.9e-190 668.3 418 80.9
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 8.4e-188 661.4 740 48.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.7e-186 656.4 420 75.0
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 5.8e-181 638.6 749 47.7
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.7e-178 629.8 770 46.8
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 8.1e-175 618.2 768 45.2
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 5.8e-173 612.1 776 44.5
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.4e-158 563.5 789 41.1
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.4e-150 537.7 387 67.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.4e-150 537.7 387 67.4
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.0e-149 533.9 277 89.9
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 3.0e-145 520.0 392 66.3
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.1e-134 485.0 475 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.2e-133 481.5 559 45.8
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.7e-120 436.0 454 50.7
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.1e-118 429.9 253 80.2
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.2e-96 358.6 779 34.0
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.9e-80 302.4 277 55.6
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 9.0e-65 252.7 754 28.8
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 5.4e-62 243.4 288 46.5
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 3.3e-51 207.6 191 55.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.9e-47 194.5 142 69.7
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.3e-43 181.0 150 66.0
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-38 165.6 82 85.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.2e-30 137.9 65 89.2
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.1e-29 133.7 150 45.3
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.0e-28 132.9 144 45.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.0e-12 79.7 108 43.5
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.8e-12 79.0 73 54.8
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.3e-12 78.6 103 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 3.0e-12 78.2 66 59.1
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 9.7e-11 73.2 101 40.6


User provided reference genes

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