Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 0.0e+00 1268.4 643 100.0
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 0.0e+00 1165.2 658 90.6
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.5e-270 936.0 645 76.6
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 4.6e-259 897.9 630 72.5
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.3e-258 896.3 647 71.6
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 2.1e-256 889.0 647 72.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 3.1e-255 885.2 644 70.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 9.8e-254 880.2 651 69.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.2e-251 873.2 640 69.5
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.1e-251 872.5 645 70.2
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.0e-250 870.2 640 69.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.1e-248 862.4 644 68.9
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 2.8e-248 862.1 643 70.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 2.8e-248 862.1 645 69.8
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.8e-248 862.1 645 69.6
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.0e-247 858.2 645 69.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.1e-244 850.1 639 68.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 5.1e-242 841.3 626 70.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 3.6e-240 835.1 648 68.7
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.3e-237 826.6 609 69.5
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 6.4e-237 824.3 644 66.3
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 7.1e-236 820.8 664 65.8
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.2e-235 820.1 636 66.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 4.6e-235 818.1 652 65.3
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 4.6e-235 818.1 637 67.0
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.9e-233 812.8 646 65.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.9e-233 812.8 654 65.6
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 2.5e-233 812.4 652 65.6
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.3e-233 811.6 647 66.2
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 3.6e-232 808.5 632 66.3
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 5.8e-230 801.2 638 65.2
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 9.9e-230 800.4 667 64.5
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.1e-228 797.0 654 65.4
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.9e-228 796.2 641 63.5
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 6.0e-227 791.2 645 65.0
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.0e-226 790.4 652 63.5
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.7e-226 789.6 643 63.9
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 3.0e-226 788.9 641 64.3
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 5.1e-226 788.1 649 64.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.3e-225 785.4 645 65.4
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.3e-224 783.5 637 63.6
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 6.2e-224 781.2 640 64.1
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.1e-223 780.4 653 64.2
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.1e-223 780.4 640 63.8
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.5e-222 776.5 630 64.3
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.0e-222 776.2 637 64.1
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.0e-222 776.2 640 64.4
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.6e-222 775.8 656 64.3
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 3.4e-222 775.4 642 63.9
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 9.9e-222 773.9 641 63.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.9e-221 772.3 642 62.9
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.4e-220 770.0 642 62.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 5.4e-220 768.1 639 64.2
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 7.1e-220 767.7 649 62.9
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 1.6e-219 766.5 631 62.8
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.3e-218 763.5 636 62.3
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.3e-218 762.7 645 62.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 3.0e-218 762.3 635 62.7
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.1e-217 760.4 638 61.6
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 3.3e-217 758.8 636 61.2
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 3.3e-217 758.8 636 61.2
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.3e-217 758.8 687 60.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 3.3e-217 758.8 643 62.4
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 4.3e-217 758.4 644 62.7
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 4.3e-217 758.4 642 62.8
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.3e-216 756.9 654 61.0
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-215 753.4 648 62.2
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.1e-215 752.3 665 60.2
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 5.3e-215 751.5 644 60.7
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.0e-213 747.3 642 61.1
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.3e-213 746.9 656 60.8
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.9e-213 745.7 639 62.0
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 4.9e-213 745.0 638 61.1
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.4e-212 743.4 655 60.3
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.1e-211 739.6 638 61.0
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.0e-210 737.3 638 60.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 3.0e-210 735.7 644 60.7
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.1e-208 729.6 605 63.8
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 8.2e-208 727.6 634 60.7
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.0e-202 710.7 653 59.4
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.3e-200 701.4 586 64.3
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.4e-199 700.3 483 72.7
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.2e-195 687.2 569 65.2
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.9e-194 682.2 531 66.9
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 6.5e-189 664.8 664 54.5
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.9e-188 663.3 526 63.3
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.5e-185 653.7 642 57.6
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.6e-179 633.6 491 66.6
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.7e-176 622.5 683 52.3
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 9.4e-172 607.8 533 62.5
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 3.6e-171 605.9 646 51.4
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 7.5e-169 598.2 493 61.5
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 7.5e-169 598.2 700 48.9
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.9e-166 588.6 598 56.0
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.2e-165 586.6 647 49.9
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.0e-161 573.5 486 63.6
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.6e-155 552.7 541 55.1
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.5e-140 504.2 638 45.1
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 9.8e-137 491.5 441 62.1
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 9.9e-129 464.9 512 52.0
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 6.4e-120 435.6 747 38.7
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.6e-115 419.9 673 40.9
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.5e-108 397.9 291 73.2
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.6e-107 394.4 272 71.0
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-106 391.7 382 59.4
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.0e-101 375.2 583 40.0
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.6e-99 367.9 338 60.7
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 5.3e-98 362.8 292 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.1e-90 338.6 643 36.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 4.2e-87 326.6 291 63.2
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 9.3e-87 325.5 335 54.0
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 5.5e-79 299.7 488 38.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 9.4e-79 298.9 435 47.8
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-71 275.0 331 48.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.5e-65 253.4 207 67.1
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 7.2e-63 246.1 174 70.1
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.5e-60 238.4 381 42.5
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.3e-59 235.3 386 42.7
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.7e-59 235.0 200 59.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.9e-57 226.5 149 73.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 3.7e-51 207.2 156 64.1
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.0e-41 174.9 116 68.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.5e-39 168.7 310 33.5
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 4.4e-36 157.1 681 28.0
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.4e-29 135.6 178 46.6
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-21 109.4 127 52.0
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.0e-16 92.8 162 40.1
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.3e-16 92.4 92 53.3
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.9e-15 88.6 60 76.7
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.8e-14 84.7 132 43.2
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 4.7e-14 84.0 117 45.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 4.0e-13 80.9 117 44.4
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.3e-11 75.9 60 63.3
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.8e-11 74.3 54 66.7
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.9e-11 73.9 71 53.5
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 3.2e-10 71.2 60 60.0
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.9e-07 62.0 56 48.2


User provided reference genes

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