Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 1.4e-90 336.3 170 100.0
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 7.0e-82 307.4 169 91.1
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 4.0e-77 291.6 161 90.7
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 9.8e-60 233.8 164 70.1
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 3.7e-59 231.9 167 71.3
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 6.3e-59 231.1 168 67.9
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.1e-58 230.3 168 69.6
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.4e-58 229.9 163 71.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.4e-58 228.0 163 70.6
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.5e-57 224.9 168 67.3
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 5.9e-57 224.6 164 68.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 6.6e-56 221.1 163 68.1
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 8.6e-56 220.7 168 66.7
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 4.3e-55 218.4 165 66.1
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 7.3e-55 217.6 166 66.9
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 9.5e-55 217.2 162 63.0
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 3.6e-54 215.3 168 64.3
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 2.3e-53 212.6 163 65.0
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 4.0e-53 211.8 160 65.6
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 4.0e-53 211.8 148 70.3
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 1.5e-52 209.9 170 64.1
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 2.6e-52 209.1 165 65.5
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 5.7e-52 208.0 162 63.6
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 5.7e-52 208.0 163 62.0
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 1.7e-51 206.5 164 63.4
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.7e-51 206.5 168 63.1
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 2.9e-51 205.7 163 63.2
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 6.4e-51 204.5 161 64.6
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 1.1e-50 203.8 165 61.8
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 1.4e-50 203.4 158 61.4
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.4e-50 203.4 163 62.0
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.8e-50 203.0 165 64.2
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 3.2e-50 202.2 161 64.0
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 7.0e-50 201.1 163 62.0
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 1.2e-49 200.3 137 69.3
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.6e-49 199.9 161 63.4
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.6e-49 199.9 161 62.7
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 2.0e-49 199.5 168 61.9
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 5.9e-49 198.0 159 60.4
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 5.9e-49 198.0 162 58.6
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 5.9e-49 198.0 163 61.3
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 5.9e-49 198.0 165 60.0
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 1.0e-48 197.2 159 61.0
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.3e-48 196.8 162 63.0
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.3e-48 196.8 158 58.9
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 1.7e-48 196.4 159 60.4
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 3.9e-48 195.3 165 57.6
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.9e-47 193.0 159 59.1
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 1.9e-47 193.0 142 64.8
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 3.3e-47 192.2 159 57.2
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 4.3e-47 191.8 165 56.4
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 5.6e-47 191.4 156 62.8
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 7.3e-47 191.0 163 62.0
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.2e-46 190.3 159 57.9
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.2e-46 190.3 156 62.2
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.6e-46 189.9 161 57.8
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 1.6e-46 189.9 134 64.9
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.6e-46 189.9 159 57.9
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 1.6e-46 189.9 160 61.9
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.6e-46 189.9 161 57.1
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 2.1e-46 189.5 159 57.9
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.1e-46 189.5 159 57.9
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 3.6e-46 188.7 132 68.9
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 4.7e-46 188.3 159 57.2
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 6.2e-46 188.0 159 57.2
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 6.2e-46 188.0 148 61.5
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 8.0e-46 187.6 166 55.4
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 8.0e-46 187.6 133 63.9
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.3e-45 186.0 161 58.4
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 4.0e-45 185.3 148 61.5
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.0e-45 185.3 159 57.9
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 4.0e-45 185.3 163 60.1
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 5.2e-45 184.9 160 57.5
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 5.2e-45 184.9 165 55.8
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 5.2e-45 184.9 165 57.6
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 1.5e-44 183.3 155 58.7
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 2.0e-44 183.0 165 55.2
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 2.6e-44 182.6 132 62.9
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 4.4e-44 181.8 132 62.1
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 5.8e-44 181.4 161 55.3
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 7.5e-44 181.0 151 58.3
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 9.8e-44 180.6 134 61.9
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 9.8e-44 180.6 162 55.6
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.3e-43 180.3 131 66.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.7e-43 179.9 166 54.2
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.7e-43 179.9 140 65.7
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.7e-43 179.9 162 54.9
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 2.9e-43 179.1 133 63.9
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 8.3e-43 177.6 163 56.4
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 1.4e-42 176.8 160 54.4
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 2.4e-42 176.0 154 57.1
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 9.2e-42 174.1 167 56.9
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 1.2e-41 173.7 144 59.0
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 1.6e-41 173.3 141 61.0
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 2.0e-41 172.9 157 55.4
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 2.7e-41 172.6 166 53.0
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 2.7e-41 172.6 163 54.6
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 1.3e-40 170.2 119 69.7
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.7e-40 169.9 119 68.9
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.7e-40 169.9 137 60.6
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 3.9e-40 168.7 120 68.3
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 4.3e-39 165.2 131 62.6
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 4.3e-39 165.2 149 56.4
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.1e-38 162.9 110 69.1
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.8e-38 162.5 163 51.5
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.3e-37 159.5 144 53.5
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 6.8e-37 157.9 140 54.3
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.5e-36 156.8 151 54.3
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 1.0e-32 144.1 105 64.8
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 2.3e-32 142.9 144 56.2
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 2.8e-30 136.0 160 48.1
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 2.3e-29 132.9 158 45.6
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 5.4e-26 121.7 132 43.2
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 1.6e-25 120.2 154 41.6
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 4.6e-25 118.6 77 71.4
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 1.0e-24 117.5 135 45.9
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 2.8e-22 109.4 109 54.1
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 3.6e-22 109.0 131 45.8
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 5.8e-20 101.7 97 58.8
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 2.2e-19 99.8 158 39.2
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 1.9e-18 96.7 92 52.2
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 3.2e-18 95.9 130 43.1
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.2e-17 94.0 92 55.4
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 7.8e-17 91.3 64 65.6
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 1.3e-16 90.5 72 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 2.3e-16 89.7 156 38.5
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.2e-12 77.4 136 34.6
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 3.8e-11 72.4 83 43.4
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 1.1e-10 70.9 76 47.4
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 1.3e-08 63.9 41 63.4
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 3.9e-08 62.4 53 52.8


User provided reference genes

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