Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 0.0e+00 1440.6 851 100.0
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 0.0e+00 1311.2 853 91.7
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.8e-255 886.3 864 68.6
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 5.9e-230 801.6 866 64.8
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 3.0e-226 789.3 865 62.9
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 1.8e-218 763.5 869 61.7
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.8e-218 763.5 859 63.0
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 4.4e-217 758.8 834 63.3
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 5.7e-209 731.9 886 61.9
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.3e-208 730.7 869 61.3
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 2.5e-204 716.5 862 61.4
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.5e-201 707.2 864 60.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 2.6e-201 706.4 856 60.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 7.5e-201 704.9 866 60.2
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.3e-200 704.1 862 60.1
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 6.3e-200 701.8 867 61.0
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.4e-199 700.7 850 60.6
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.2e-198 697.6 805 61.9
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 2.7e-198 696.4 863 59.4
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 7.8e-198 694.9 861 60.4
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.7e-197 693.7 864 59.6
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 3.3e-196 689.5 696 67.5
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.3e-196 689.1 712 66.4
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 2.6e-193 679.9 863 56.5
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 3.2e-191 672.9 867 57.6
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 1.0e-189 667.9 845 58.3
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 9.5e-188 661.4 867 49.6
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 6.2e-187 658.7 861 58.5
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 2.3e-186 656.8 856 55.8
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 2.3e-186 656.8 856 55.8
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 5.2e-186 655.6 811 56.8
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 7.5e-185 651.7 867 55.2
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 1.7e-184 650.6 858 54.5
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 1.7e-184 650.6 858 54.5
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.4e-183 647.5 806 59.3
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 1.9e-183 647.1 847 55.1
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 7.0e-183 645.2 780 58.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 9.2e-183 644.8 862 55.8
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 9.2e-183 644.8 861 57.7
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 5.1e-181 639.0 853 57.1
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 4.3e-180 636.0 863 54.5
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 8.1e-179 631.7 847 56.6
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.1e-178 631.3 855 57.0
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.8e-178 630.6 784 52.7
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 4.0e-178 629.4 858 54.8
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.2e-177 627.9 784 52.3
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 1.5e-177 627.5 901 47.3
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 4.4e-177 625.9 858 56.4
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 9.9e-177 624.8 856 55.8
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.4e-175 620.9 807 57.2
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.2e-174 617.8 853 56.0
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 2.7e-174 616.7 850 54.9
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.3e-173 614.4 805 50.9
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.7e-173 614.0 858 54.9
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 1.1e-172 611.3 863 54.8
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.1e-172 611.3 857 55.1
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 3.3e-172 609.8 741 57.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 4.3e-172 609.4 857 55.1
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 5.6e-172 609.0 803 57.9
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 2.1e-171 607.1 749 58.5
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.1e-170 604.7 856 49.1
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.8e-170 604.0 851 53.7
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.8e-170 604.0 866 47.3
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 6.8e-170 602.1 742 57.8
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.5e-169 600.9 829 50.8
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.7e-168 597.4 876 49.0
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.2e-168 597.0 833 56.2
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 7.1e-167 592.0 853 54.6
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 1.7e-165 587.4 863 54.0
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 5.1e-165 585.9 858 55.2
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 7.3e-164 582.0 869 53.4
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 3.6e-163 579.7 863 52.0
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 6.2e-163 578.9 809 54.4
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 3.8e-160 569.7 854 49.5
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.1e-159 568.2 770 56.5
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 1.1e-159 568.2 800 54.1
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 3.5e-158 563.1 870 51.4
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 2.3e-157 560.5 855 51.6
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 3.9e-157 559.7 832 54.0
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.5e-156 557.8 881 45.7
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 1.4e-154 551.2 881 51.9
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 1.5e-153 547.7 885 51.9
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 5.6e-148 529.3 841 52.7
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 4.6e-142 509.6 785 41.1
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 6.9e-138 495.7 592 63.7
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 1.8e-125 454.5 780 48.8
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 9.4e-119 432.2 832 39.2
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 9.7e-108 395.6 528 62.3
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 3.2e-103 380.6 872 42.0
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 8.8e-101 372.5 574 48.6
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 5.7e-92 343.2 408 68.9
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-82 312.4 346 66.2
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 5.9e-81 306.6 657 32.6
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 7.3e-79 299.7 791 40.8
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 9.5e-79 299.3 535 56.1
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.7e-67 260.8 799 37.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 2.5e-63 248.1 723 38.7
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.4e-61 242.3 287 50.2
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 2.1e-46 191.8 229 51.5
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.4e-45 189.1 232 51.3
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 2.4e-45 188.3 499 35.1
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 6.4e-43 180.3 313 51.1
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.3e-27 129.4 190 41.1
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.5e-20 105.9 163 38.7
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 5.9e-20 104.0 135 45.2
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 7.6e-20 103.6 74 66.2
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 1.5e-15 89.4 107 43.9
ECA248G0269 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.6e-09 67.8 252 26.2
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 7.9e-09 67.0 163 57.1
PRCOL_00006441 Prasinoderma coloniale HOM05D007104 ORTHO05D008851 1.4e-08 66.2 231 23.8
Phvul.002G069500 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 8.8e-08 63.5 170 22.4
Sp1g04940 Schrenkiella parvula HOM05D000001 ORTHO05D011479 1.1e-07 63.2 188 25.0
Aa31LG1G7160 Aethionema arabicum HOM05D000001 ORTHO05D011479 2.0e-07 62.4 184 22.8
Carub.0001s0548 Capsella rubella HOM05D000001 ORTHO05D011479 2.0e-07 62.4 192 26.6
VMungo1215G1316 Vigna mungo HOM05D000001 ORTHO05D000003 2.0e-07 62.4 199 22.1
Haze_07463 Corylus avellana HOM05D000001 ORTHO05D000003 2.5e-07 62.0 231 23.4
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.5e-07 62.0 135 28.1
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 3.3e-07 61.6 199 28.1
A06p31190 Brassica napus HOM05D000001 ORTHO05D011479 4.3e-07 61.2 197 24.9
Glyma.01G054900 Glycine max HOM05D000001 ORTHO05D000003 4.3e-07 61.2 267 19.1
Cfa019110 Carpinus fangiana HOM05D000001 ORTHO05D000003 7.4e-07 60.5 224 24.6
AL1G16080 Arabidopsis lyrata HOM05D000001 ORTHO05D011479 1.3e-06 59.7 188 25.0
AagrBONN_evm.TU.Sc2ySwM_344.178 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 58.5 247 23.1
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 2.8e-06 58.5 147 29.3
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 3.7e-06 58.2 172 26.7
AagrBONN_evm.TU.Sc2ySwM_228.1148 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.3e-06 57.4 321 22.1
CANSAT01G2727 Cannabis sativa HOM05D000001 ORTHO05D000003 6.3e-06 57.4 216 23.6
AagrBONN_evm.TU.Sc2ySwM_368.1667 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.2e-06 57.0 253 19.8
MSTRG.24784 Avicennia marina HOM05D000001 ORTHO05D000003 8.2e-06 57.0 190 25.3
CARHR041310 Cardamine hirsuta HOM05D000001 ORTHO05D000003 8.2e-06 57.0 193 24.4
Dinv22444 Davidia involucrata HOM05D000001 ORTHO05D011479 8.2e-06 57.0 173 24.3


User provided reference genes

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