Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.2e-56 220.3 109 100.0
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.8e-46 189.1 109 85.3
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 2.8e-44 181.8 109 78.0
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.8e-44 181.8 109 78.0
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.1e-43 179.9 109 77.1
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.4e-43 178.7 109 77.1
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 4.1e-43 177.9 109 76.1
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 5.3e-43 177.6 109 76.1
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 9.1e-43 176.8 109 76.1
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 79.0
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.6e-42 175.3 103 81.6
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 2.6e-42 175.3 109 74.3
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 3.5e-42 174.9 104 78.8
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 3.5e-42 174.9 109 73.4
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 4.5e-42 174.5 105 78.1
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 4.5e-42 174.5 109 76.1
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 1.0e-41 173.3 105 80.0
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 1.3e-41 172.9 106 79.2
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 1.3e-41 172.9 106 79.2
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 2.9e-41 171.8 106 78.3
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.9e-41 171.8 102 80.4
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 5.0e-41 171.0 106 78.3
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 6.5e-41 170.6 105 75.2
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 2.5e-40 168.7 104 77.9
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 3.2e-40 168.3 105 77.1
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 4.2e-40 167.9 103 76.7
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 5.5e-40 167.5 101 77.2
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 7.2e-40 167.2 104 76.0
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 7.2e-40 167.2 102 75.5
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 7.2e-40 167.2 102 77.5
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 7.2e-40 167.2 103 76.7
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 7.2e-40 167.2 105 74.3
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 9.4e-40 166.8 103 76.7
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 9.4e-40 166.8 105 76.2
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 1.2e-39 166.4 105 74.3
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 1.6e-39 166.0 102 78.4
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 75.2
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 72.4
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.6e-39 166.0 109 72.5
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 2.1e-39 165.6 102 77.5
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 2.1e-39 165.6 103 77.7
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.7e-39 165.2 103 74.8
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 76.2
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 3.6e-39 164.9 103 74.8
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 3.6e-39 164.9 102 76.5
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 4.7e-39 164.5 102 77.5
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.7e-39 164.5 103 75.7
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 4.7e-39 164.5 105 74.3
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 4.7e-39 164.5 102 74.5
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 4.7e-39 164.5 106 72.6
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 6.1e-39 164.1 102 75.5
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 6.1e-39 164.1 105 73.3
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 6.1e-39 164.1 105 73.3
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 6.1e-39 164.1 102 73.5
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 6.1e-39 164.1 102 73.5
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 8.0e-39 163.7 102 77.5
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 8.0e-39 163.7 107 74.8
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.4e-38 162.9 101 76.2
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.8e-38 162.5 103 73.8
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.8e-38 162.5 103 72.8
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.8e-38 162.5 103 72.8
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.8e-38 162.5 105 75.2
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 1.8e-38 162.5 105 72.4
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 2.3e-38 162.2 102 74.5
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 2.3e-38 162.2 103 78.6
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 73.3
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 4.0e-38 161.4 106 73.6
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 5.2e-38 161.0 102 73.5
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 6.7e-38 160.6 107 74.8
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 8.8e-38 160.2 100 76.0
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.5e-37 159.5 103 74.8
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 2.0e-37 159.1 104 70.2
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.0e-37 159.1 103 74.8
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 2.0e-37 159.1 103 72.8
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 2.6e-37 158.7 104 69.2
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 2.6e-37 158.7 104 69.2
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 71.4
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 3.3e-37 158.3 109 68.8
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 74.3
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 4.4e-37 157.9 106 69.8
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 5.7e-37 157.5 105 71.4
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 7.5e-37 157.1 105 71.4
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 1.3e-36 156.4 107 72.9
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.7e-36 156.0 105 71.4
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.2e-36 155.6 105 69.5
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 71.4
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 71.4
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 3.7e-36 154.8 105 68.6
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.1e-35 153.3 103 70.9
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 71.4
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 70.5
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 3.1e-35 151.8 99 71.7
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 3.5e-34 148.3 105 67.6
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 1.7e-33 146.0 98 69.4
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 2.2e-33 145.6 106 66.0
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 2.2e-33 145.6 106 67.9
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 2.2e-33 145.6 102 64.7
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 8.5e-33 143.7 103 62.1
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.9e-32 142.5 130 55.4
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 3.2e-32 141.7 103 61.2
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 5.5e-32 141.0 107 62.6
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.6e-31 139.4 102 66.7
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 2.7e-31 138.7 102 65.7
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 4.7e-31 137.9 134 53.7
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 1.8e-30 136.0 78 83.3
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 2.3e-30 135.6 91 69.2
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 1.2e-29 133.3 90 68.9
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 7.5e-29 130.6 106 59.4
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.4e-27 126.3 91 63.7
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.4e-27 125.6 107 60.7
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.6e-26 122.9 74 79.7
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 1.6e-26 122.9 100 56.0
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 2.7e-26 122.1 75 77.3
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 3.5e-26 121.7 89 65.2
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 4.5e-26 121.3 99 58.6
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 5.0e-25 117.9 90 58.9
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 1.9e-24 115.9 75 72.0
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 5.5e-24 114.4 83 68.7
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 7.2e-24 114.0 74 73.0
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 2.8e-23 112.1 98 56.1
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.3e-22 109.0 68 77.9
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.3e-22 109.0 68 77.9
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.0e-21 105.9 111 54.1
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 2.6e-21 105.5 96 54.2
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 7.5e-21 104.0 103 53.4
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 7.5e-21 104.0 68 70.6
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 2.4e-19 99.0 82 56.1
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 4.1e-19 98.2 104 53.8
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 1.5e-13 79.7 48 79.2
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.3e-12 76.6 80 53.8
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 7.0e-11 70.9 86 40.7
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 1.2e-10 70.1 45 64.4
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 3.5e-10 68.6 51 68.6
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.3e-08 61.6 42 59.5


User provided reference genes

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